Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151304g00005 ATGGCCAAAAGATATCAGGGACGAGCAGTGGGAATAGACCTTGGTACGACCTACTCATGTGTTGCTGTGTGGCAGGATGAGCACCAGCGAGTGGAGATCATCCACAATGACCAAGGCAACAGAACAACACCTTCTTGTGTTGCTTTCACTGATAAGCAAAGGTTGATCGGTGATGCTGCTAAGAATCAAGCTGCTTCTAATCCAACTAACACTATCTTTGATGCCAAAAGGTTGATTGGCAGGAAATATAGTGACCCCATTATCAAGAATGACATGATGCTGTGGCCATTTAAAGTAATTCCCGGTGATGATGACAAACCAATGGTTTCTGTTACATATAAGGGTCAGGAGAAGCATCTTTCTGCTGAAGAAATTTCATCCATGGTTCTAACAAAAATGCGGGAGATTGCAGAGGCATATTTGGAAGCTCCTGTCAATAATGCAGTGATTACTGTGCCTGCTTATTTCAGTGATGCTCAACGAAAAGCAACAAAAGATGCTGGTGCCATTGCAGGCCTCAATGTCATGAGAATTATCAATGAGCCTACAGCTGCAGCCATTGCATATGGCCTCGACAAGGTAGCTGATTGCACTGGAGAACGAAATATATTCATCTTTGACCTCGGTGGTGGTACTTTTGATGTGTCTCTGCTTACAATTAAAGATAAAATCTTTCAAGTTAAGGCCACGGCAGGAAATACTCACCTTGGTGGAGAAGACCTAGATAACAGACTGGTGAATTACTTTGTAGAAGAGTTCAAAAGGAAGAACAAGGTGGATATTAGTGGGAACCCAAAAGCTTTGCGAAGGATGAGAAGTGCATGCGAAAGGGCCAAAAGGACACTTTCATTTGCTGTTGATACTGTAATTGAAGTGGATGCTTTATATCAAGGCATTGACCTTTATTCATCACTTAGCCGTGCCAAGTTTGAGGAACTAAACATGGAACTCTTTAGAGAGTGTATGGAAATAGTAGGTAAGTGTCTCACTGATGCTAACATGGACAGGTCTTGTATACATGATGTTGTCCTTGTTGGCGGTTCTTCTAGGATTCCCAAAGTGCAACAGCTATTGCAGGAATTCTTTAGAGGGAAGGATCTTTGCAAGAGTATTAACCCGGATGAAGCTGTTGCCTATGGAGCAGCAGTTCAGGCTGCTTTATTGAGTGAAGACATCCAGAAAGCACCAGAATTGGTTCTATTGGATGTTACTCCCTTATCACTTGGTATTTTCACAGAACGAGACCTCATGGATGTAGTGATTCCTAGGAATACTACCATACCTGCAAACAGGACAAAGGAATACAGTACAGCTAAAGATAACCAAACCTCTGTTTCAATTAAAGTTTATGAGGGTGAGAGGACAAGAGCAACTGATAACAACTTATTGGGTTTATTTAATCTTTCTGGTCTTCCTTGTGCTCCTCGTGGCCATCCTTTGTATGTATGCTTCAATATAGATGCTGATGGTATCCTAAATGTATCTGCCTGGGAAGAAACCAATCATTGTAGGAATGAAATTAATATTACTAATGACAAAGAAAGACTTACAGCCACAGAAATTCAAAGACTAACTGAGGAAGCTGAGAATTACAAGGTTGAAGATGCAAATTTCCTTAAGAAGGCTAATGCAATGAATGCTTTGGATCATTATGTTTACAGGATGGAAAAAGCTCTAAAGGATCAAGACATTAGCTCTAAGCTTTACCCTTTGGACAAGGAGAAGATCCATTCTGCAATTGCGAAGGCCAGGAATCTGCTTGATGGTGATAACCAGCAGCGAGAAATTGATGAGTTTCATAATTGTCTGAGGGAGGTCAAGGGCATCTTTGAACACATCATGGCCAAGACTGGATTGTCATTCTTGTCTCTTTCTTAA 1878 0.4127 MAKRYQGRAVGIDLGTTYSCVAVWQDEHQRVEIIHNDQGNRTTPSCVAFTDKQRLIGDAAKNQAASNPTNTIFDAKRLIGRKYSDPIIKNDMMLWPFKVIPGDDDKPMVSVTYKGQEKHLSAEEISSMVLTKMREIAEAYLEAPVNNAVITVPAYFSDAQRKATKDAGAIAGLNVMRIINEPTAAAIAYGLDKVADCTGERNIFIFDLGGGTFDVSLLTIKDKIFQVKATAGNTHLGGEDLDNRLVNYFVEEFKRKNKVDISGNPKALRRMRSACERAKRTLSFAVDTVIEVDALYQGIDLYSSLSRAKFEELNMELFRECMEIVGKCLTDANMDRSCIHDVVLVGGSSRIPKVQQLLQEFFRGKDLCKSINPDEAVAYGAAVQAALLSEDIQKAPELVLLDVTPLSLGIFTERDLMDVVIPRNTTIPANRTKEYSTAKDNQTSVSIKVYEGERTRATDNNLLGLFNLSGLPCAPRGHPLYVCFNIDADGILNVSAWEETNHCRNEINITNDKERLTATEIQRLTEEAENYKVEDANFLKKANAMNALDHYVYRMEKALKDQDISSKLYPLDKEKIHSAIAKARNLLDGDNQQREIDEFHNCLREVKGIFEHIMAKTGLSFLSLS 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151304g00005 625 Gene3D Actin; Chain A, domain 4 237 320 - -
Stsc151304g00005 625 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 395 549 IPR029047 -
Stsc151304g00005 625 ProSitePatterns Heat shock hsp70 proteins family signature 2. 205 218 IPR018181 -
Stsc151304g00005 625 FunFam Heat shock protein 70 10 201 - -
Stsc151304g00005 625 Gene3D - 546 618 IPR029048 -
Stsc151304g00005 625 FunFam Heat shock 70 kDa 237 320 - -
Stsc151304g00005 625 FunFam heat shock 70 kDa protein-like 73 128 - -
Stsc151304g00005 625 Pfam Hsp70 protein 9 612 IPR013126 GO:0005524|GO:0140662
Stsc151304g00005 625 ProSitePatterns Heat shock hsp70 proteins family signature 1. 12 19 IPR018181 -
Stsc151304g00005 625 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 544 616 IPR029048 -
Stsc151304g00005 625 SUPERFAMILY Actin-like ATPase domain 198 389 IPR043129 -
Stsc151304g00005 625 Gene3D - 194 368 - -
Stsc151304g00005 625 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 393 545 IPR029047 -
Stsc151304g00005 625 PANTHER HEAT SHOCK PROTEIN 70KDA 9 582 IPR013126 GO:0005524|GO:0140662
Stsc151304g00005 625 Coils Coil 521 541 - -
Stsc151304g00005 625 Gene3D - 73 128 - -
Stsc151304g00005 625 ProSitePatterns Heat shock hsp70 proteins family signature 3. 342 356 IPR018181 -
Stsc151304g00005 625 FunFam Heat shock 70 kDa protein 391 545 - -
Stsc151304g00005 625 SUPERFAMILY Actin-like ATPase domain 8 193 IPR043129 -
Stsc151304g00005 625 PRINTS 70kDa heat shock protein signature 211 221 - -
Stsc151304g00005 625 PRINTS 70kDa heat shock protein signature 477 493 - -
Stsc151304g00005 625 PRINTS 70kDa heat shock protein signature 38 50 - -
Stsc151304g00005 625 PRINTS 70kDa heat shock protein signature 339 355 - -
Stsc151304g00005 625 PRINTS 70kDa heat shock protein signature 397 416 - -
Stsc151304g00005 625 PRINTS 70kDa heat shock protein signature 148 168 - -
Stsc151304g00005 625 PRINTS 70kDa heat shock protein signature 371 391 - -
Stsc151304g00005 625 PRINTS 70kDa heat shock protein signature 8 21 - -
Stsc151304g00005 625 PRINTS 70kDa heat shock protein signature 60 68 - -
Stsc151304g00005 625 Gene3D - 10 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151304g00005 Stsc-Chr151304 18657 21481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151304g00005 1 616 Calmodulin-binding Proteins AT3G12580 66.505 0.0 845
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151304g00005 K03283 - gmx:102667578 906.746