Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151301g00005 ATGAACATGATGAGAAAGTTGAAAAGCATTGCTTCTGGGAAGGGCTCTCTTGCAGATTCTGGAGGGGATTATACAAAAAGAGATAAGTTTGAAGAAGATATTGAAAGTAATGATAGGGGGCATCACATAAATGCATCAAAAGAAGCTAATGGCACATCTAGTTCCAATAATGTAGCTAAAGATTTGCAAGAAATCAAAATTAGAGATGAGAAAGGCAAAACCAACAATGGAAAGGATATGGAAGCAACAGTAGTGAATGGAAATGGAACAGAAACAGGTCAAATAATCACTACTGCGGTTGGTGGTCATGATGGACAGCCAAAGCAGACAATCTCATACATGGCAGAACGTGTGGTTGGGACTGGTTCTTTTGGTGTTGTCTATCAGGCAAAGTGCGTTGAAAGTGGAGAAACCGTTGCAATAAAGAAAGTGTTGCAAGACAAGAGATACAAGAACAGAGAACTGCAAGTGATGAGAATGCTTGACCATACAAATGTTCTGAAACTCAAGCATTGCTTCTATTCATTGGCAACTAAGGATGAATTGTACCTTAATCTTGTTTTGGAGTATGTCCCTGAAACTGTCTACAGAGTTTCTAAGCAATATGTCAGGGTCCACCAAGACATGCCCACAATCTATATTCAACTATATACATACCAAATATGCCGTGGTTTAAATTACTTGCATCATGTGATTAATGTGTGTCACCGTGATATCAAGCCCCAAAATCTCTTGGTTAACCCCCAAACTCATCAGTTAAAGATATGTGATTTTGGGAGTGCAAAGATGTTGGTGCCTGGTGAACCAAACATATCATACATATGCTCAAGGTATTATAGAGCTCCAGAACTAATATTTGGGGCAACAGAATACACAACTGCCATTGATGTTTGGTCTGCTGGTTGTGTTTTAGCTGAGCTTATGTTAGGACAGCCAATGTTCCCTGGGGAGAGTGGGGTTGATCAATTAGTAGAGATTATTAAGGTGTTGGGAACACCAAGCAAAGAGGAAATAAAGAACATGAACCCAAATTACAACGAGTTTAAGTTTCCTCAGATAAAAGCTCATCCATGGAATAAGGTTTTTCCTAAAGCAATGCCTTCTGAAGCAATAGATCTAGCGTCAAAGATGCTTCAGTATTCACCTAATCAACGTTGCACTGCTTTGGAAGCATGTGCTCACCCATTCTTTGATGATCTCCGAAACCCAAATGTGACTTTGCCAAATGGACGACCACTTCCACCTTTGTTTGATTTCTCAGCTCAAGAACTAGCTGATGCACCTGATGAGTTGCGTCGACGTCTAATTCCAGAGCATGCAAGAAATTAA 1329 0.3995 MNMMRKLKSIASGKGSLADSGGDYTKRDKFEEDIESNDRGHHINASKEANGTSSSNNVAKDLQEIKIRDEKGKTNNGKDMEATVVNGNGTETGQIITTAVGGHDGQPKQTISYMAERVVGTGSFGVVYQAKCVESGETVAIKKVLQDKRYKNRELQVMRMLDHTNVLKLKHCFYSLATKDELYLNLVLEYVPETVYRVSKQYVRVHQDMPTIYIQLYTYQICRGLNYLHHVINVCHRDIKPQNLLVNPQTHQLKICDFGSAKMLVPGEPNISYICSRYYRAPELIFGATEYTTAIDVWSAGCVLAELMLGQPMFPGESGVDQLVEIIKVLGTPSKEEIKNMNPNYNEFKFPQIKAHPWNKVFPKAMPSEAIDLASKMLQYSPNQRCTALEACAHPFFDDLRNPNVTLPNGRPLPPLFDFSAQELADAPDELRRRLIPEHARN 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151301g00005 442 Gene3D Phosphorylase Kinase; domain 1 97 192 - -
Stsc151301g00005 442 SUPERFAMILY Protein kinase-like (PK-like) 112 424 IPR011009 -
Stsc151301g00005 442 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 74 441 - -
Stsc151301g00005 442 MobiDBLite consensus disorder prediction 21 45 - -
Stsc151301g00005 442 ProSiteProfiles Protein kinase domain profile. 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151301g00005 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Stsc151301g00005 442 FunFam Shaggy-related protein kinase kappa 193 441 - -
Stsc151301g00005 442 FunFam Glycogen synthase kinase-3 beta 97 192 - -
Stsc151301g00005 442 MobiDBLite consensus disorder prediction 1 59 - -
Stsc151301g00005 442 SMART serkin_6 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151301g00005 442 ProSitePatterns Protein kinases ATP-binding region signature. 119 143 IPR017441 GO:0005524
Stsc151301g00005 442 Pfam Protein kinase domain 113 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151301g00005 442 CDD STKc_GSK3 108 400 IPR039192 -
Stsc151301g00005 442 Gene3D Transferase(Phosphotransferase) domain 1 193 441 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151301g00005 Stsc-Chr151301 47578 51302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151301g00005 119 400 Core Cell Cycle Gene Families AT1G76540 36.770 4.15e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Stsc151301g00005 Pkinase 7.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151301g00005 K27414 - gmx:100784150 735.332