Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151299g00002 ATGAAAACTAATAACAATAGCAACAACACTGCACCACTTTATTGCCCTCCATTACAACTCCCATCCGATTATCATGGATATGATTACTCCTTATTGATCACATCAACACCTTATTACTCATGGCCTTGTCCCTCCACTGGCACTACCGGAAGGTATCGGGGCACCCGGTGCCGGAGTGGAAAATGGGTGTCAGAGATAAGGGAGCCACGCAAGTCAAATCGCATATGGCTAGGGACTTACCCAACACCGGAGATGGCTGCCACCGCTTACGATGTTGCTGCTCTTGCATTAAGAGGCCCAGATGCTATTCTCAACTTCCCCAATTTCATGCTCGCTTACGCTATTCCTGCCTCCTTGTCTGCCCATGATATCCGCGCTGCTGCGGCGGCCGCAGCCCAGGCCAGGCTTTTCACACCTCCGCCGCCAACACCTACTGTTGGTGGGAGCTATTACAGTGAAGAAAAAGAGTTGTTGGGGGATAATTATTTGGATGAAGAGGAGGTATGGAATATGCCGAGGTTGATGGAAGAAATGGCCAGGGAAATGCTTATGAGTCCACCAAGAATGGTAGAGTCTTTCTCCGCTGATGAGTTTGCCGAATGCTATATGGATCTATATAATACCCTTTGGAGTACTCAGTAA 642 0.486 MKTNNNSNNTAPLYCPPLQLPSDYHGYDYSLLITSTPYYSWPCPSTGTTGRYRGTRCRSGKWVSEIREPRKSNRIWLGTYPTPEMAATAYDVAALALRGPDAILNFPNFMLAYAIPASLSAHDIRAAAAAAAQARLFTPPPPTPTVGGSYYSEEKELLGDNYLDEEEVWNMPRLMEEMAREMLMSPPRMVESFSADEFAECYMDLYNTLWSTQ 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151299g00002 213 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Stsc151299g00002 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 48 178 - -
Stsc151299g00002 213 CDD AP2 51 108 IPR001471 GO:0003700|GO:0006355
Stsc151299g00002 213 Pfam AP2 domain 56 99 IPR001471 GO:0003700|GO:0006355
Stsc151299g00002 213 SUPERFAMILY DNA-binding domain 52 108 IPR016177 GO:0003677
Stsc151299g00002 213 ProSiteProfiles AP2/ERF domain profile. 51 107 IPR001471 GO:0003700|GO:0006355
Stsc151299g00002 213 SMART rav1_2 51 113 IPR001471 GO:0003700|GO:0006355
Stsc151299g00002 213 FunFam Ethylene-responsive transcription factor 2 51 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151299g00002 Stsc-Chr151299 19190 19831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151299g00002 45 190 AP2-EREBP Transcription Factor Family AT5G52020 53.988 4.84e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc151299g00002 AP2 8.1e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151299g00002 - - gmx:100813560 176.407