Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151298g00002 ATGGCTTCCCTTATTGGCGTTTCTTCTGTACACCAAACCCACGCTCTCGAGCTCTACAAGAGAACCACAACGCCAGTGACGACGGCGACAACAGCTTCGGGTTCTACCAACGCCGTTTCGCTCTCTTCGTTGTCGTTTGACAACAAGTCGCACTTCAACTCCGTTCTCAGAATTCACTGTCACCTTAACGACGGAAATAATAGGCGCATGCTCGGTATTGTTCCTACTTCTAATGCTGTTGTGACAGCTAATGAATCTTCCGTGCTCAGCGAAGAAGCCTTCAAGGGTTTTGGTTTTGACGGTGTTGGCGATGATGACGAGGTTAGTTATGAGTACGAGAGTGACGGTGACGGTAACGCTGAATTTCTTGCTTCAAGCAAAGATGAGCTCGATGTTTCGAAGCTTGGTTTGCCTTCGAAGCTCGTCGACTCGCTCCAGAAGCGTGGAATCACTAGCCTTTTCCCAATTCAGAGAGCTGTGTTAGTGCCTGCACTAGAAGGTAGAGATATCATTGCCCGGGCAAAGACCGGGACAGGGAAGACATTGGCGTTTGGGATTCCCATTATTAAAGGCATCACCGATGATGAGCAAGGTTCTTACAGGCGTTCTGGTCGTCTTCCTAAACAAAGTGCTCTTTCGCGTGGTGTTGATGTAGTGGTTGGAACACCTGGAAGAATAATTGACCTAATAAATGGGAACAGCCTTAAATTGAGTGAAGTTCAATATTTGGTTCTTGATGAAGCCGATCGAATGCTTGCTGTTGGGTTTGAGGAGGATGTGGAAGTAATTTTGGAAAAGGTCCCATCTGAGCGGCAAATAATGCTTTTCTCTGCGACCATGCCGGGTTGGGTGAAGAAATTGTCAAGAAAATATCTGAACAATCCGTTGACAATTGATTTGGTCGGTGACGAAGAAGAAAAGCTTGCTAATGGGATCAAACTTTATGCTATGTCAGCCACTGGCACTTCAAAGCGGACAATTCTTTCCGATCTTGTAACTGTCTATGCAAAGGGTGGAAAGACTATTGTTTTCACCCAGACAAAAAAAGATGCCGATGAAGTATCACTGTCATTAACAAGTAGTATAGCTTCTGAAGCACTGCATGGTGATATATCTCAGCATCAGAGAGAAAGAACATTGAATGGCTTTCGGCAAGGGAAGTTCACTGTACTTGTTGCCACGGATGTTGCAGCCCGTGGGCTCGATATTCCCAATGTTGATTTGGTTATCCATTACGAACTTCCTAATGATCCTGAGACTTTTGTGCATCGCTCTGGTCGTACTGGGCGTGCTGGAAAAGAAGGTACTGCCATTCTGATGTACACCAGTAGCCAGAAGAGAACCGTTAGATCCCTTGAGCATGATGTGGGCTGCAAATTTGAATTTGTTAATCCACCAGCTATTGGAGAGATTTTGGAAGCATCTGCTGCCCAAGTTGTTGCTACACTCGAGAGAGTTCATCCCGAGTCTATTGAGTTCTTCACTTCAACTGCACAAAAATTGGTTGAAGAACAAGGGGTTAGTGCCCTCGCAGCTGCACTAGCACAGCTGAGTGGATTCGGTAGACCTCCATCATCGCGATCATTAATCAACCATGAGCAGGGATGGGTTACATTGCAACTTACTCGGGATGGAGATAATTCTAGAAGATTTCTTTCTGCAAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTCCTGCTGCTGATGAAGTTGGAAAAATACATATAATTGCAGATGACCGGATTCAAGGAGCTGTTTTTGATCTTCCGGAGGACATTGCTAAAGAATTACTCAACAAGGATTTGCCTCCTGGAAACACTATTTCCAAGATCACCAAGTTACCTGTTTTGCAAGATGATGGACCTGCAAGTGATTACTATGGGAAGTTTTCTGACAGAGAACGAAGTAACCGAAGAGGTTCAAGAGATCAGAGAGGTTTTAAAACCTCACGAGGATATGGAGGAAACCGAGGTTCTGATGATGATTTTGGTAGTTCATACGGGAGAGGGAGTAAAAATTTTAAATCGGGGAACAACCGGTCTCGAATGGGAAAAAGCAGTGATGACTGGCTGATTGGAGGGAGACAATCAAGCAGGGGTGGTAGCTATGGAGGGGCCTGCTTTAACTGCGGAGAATCTGGGCATCGTGCATCAGATTGTCCCCAAAAGCGAAGCTTCTTTTAG 2187 0.4527 MASLIGVSSVHQTHALELYKRTTTPVTTATTASGSTNAVSLSSLSFDNKSHFNSVLRIHCHLNDGNNRRMLGIVPTSNAVVTANESSVLSEEAFKGFGFDGVGDDDEVSYEYESDGDGNAEFLASSKDELDVSKLGLPSKLVDSLQKRGITSLFPIQRAVLVPALEGRDIIARAKTGTGKTLAFGIPIIKGITDDEQGSYRRSGRLPKQSALSRGVDVVVGTPGRIIDLINGNSLKLSEVQYLVLDEADRMLAVGFEEDVEVILEKVPSERQIMLFSATMPGWVKKLSRKYLNNPLTIDLVGDEEEKLANGIKLYAMSATGTSKRTILSDLVTVYAKGGKTIVFTQTKKDADEVSLSLTSSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAILMYTSSQKRTVRSLEHDVGCKFEFVNPPAIGEILEASAAQVVATLERVHPESIEFFTSTAQKLVEEQGVSALAAALAQLSGFGRPPSSRSLINHEQGWVTLQLTRDGDNSRRFLSARSVTGFLSDVYSPAADEVGKIHIIADDRIQGAVFDLPEDIAKELLNKDLPPGNTISKITKLPVLQDDGPASDYYGKFSDRERSNRRGSRDQRGFKTSRGYGGNRGSDDDFGSSYGRGSKNFKSGNNRSRMGKSSDDWLIGGRQSSRGGSYGGACFNCGESGHRASDCPQKRSFF 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151298g00002 728 Gene3D - 320 517 IPR027417 -
Stsc151298g00002 728 FunFam Nucleolar RNA helicase II 320 510 - -
Stsc151298g00002 728 SMART helicmild6 352 432 IPR001650 -
Stsc151298g00002 728 Pfam DEAD/DEAH box helicase 154 194 IPR011545 GO:0003676|GO:0005524
Stsc151298g00002 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 276 IPR027417 -
Stsc151298g00002 728 MobiDBLite consensus disorder prediction 626 696 - -
Stsc151298g00002 728 MobiDBLite consensus disorder prediction 670 686 - -
Stsc151298g00002 728 Pfam Helicase conserved C-terminal domain 325 432 IPR001650 -
Stsc151298g00002 728 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 298 IPR014001 -
Stsc151298g00002 728 SUPERFAMILY Retrovirus zinc finger-like domains 695 726 IPR036875 GO:0003676|GO:0008270
Stsc151298g00002 728 Gene3D - 202 302 IPR027417 -
Stsc151298g00002 728 SMART c2hcfinal6 707 723 IPR001878 GO:0003676|GO:0008270
Stsc151298g00002 728 Gene3D - 117 201 IPR027417 -
Stsc151298g00002 728 MobiDBLite consensus disorder prediction 627 647 - -
Stsc151298g00002 728 Pfam GUCT (NUC152) domain 519 619 IPR012562 GO:0003723|GO:0004386|GO:0005524
Stsc151298g00002 728 Pfam Zinc knuckle 707 723 IPR001878 GO:0003676|GO:0008270
Stsc151298g00002 728 Pfam DEAD/DEAH box helicase 208 287 IPR011545 GO:0003676|GO:0005524
Stsc151298g00002 728 Gene3D - 695 726 - -
Stsc151298g00002 728 CDD SF2_C_DEAD 312 441 - -
Stsc151298g00002 728 SMART ultradead3 149 315 IPR014001 -
Stsc151298g00002 728 CDD DEADc 141 299 - -
Stsc151298g00002 728 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 327 487 IPR001650 -
Stsc151298g00002 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 451 IPR027417 -
Stsc151298g00002 728 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 244 252 IPR000629 -
Stsc151298g00002 728 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 125 196 - -
Stsc151298g00002 728 CDD GUCT_Hera 526 606 - -
Stsc151298g00002 728 ProSiteProfiles Zinc finger CCHC-type profile. 708 723 IPR001878 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151298g00002 Stsc-Chr151298 2498 7455 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151298g00002 104 454 Eukaryotic Initiation Factors Gene Family AT3G19760 31.088 4.35e-49 176
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151298g00002 - - pcin:129296705 997.267