Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151295g00002 ATGGTTAGAGGGAAGACTCAGATGAGGCGCATAGAAAACGCAACAAGCAGGCAAGTGACGTTCTCAAAGCGGCGAAATGGTTTGCTTAAGAAAGCATTTGAGCTTTCTGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCTCCAAGAGGCAAGCTTTATGAATTTGCAAGCTCAAGCATGCAGGAGACAATTGAACGATATCGCAAGCATACAAAGGATACTCCAGCAGCAGCCAAATCAGCTGAAGAGAATGTGCAGAATTTGAAGCAAGAAGCAGCAATCTTGATGAAAAAGATTGACATTCTTGAAGAAGCAAAAAGGAAATTCTTGGGAGAAGGTATAGGGTCATATAGTCTTGAAGATCTGCAACAGATAGAACAACAGTTGGAGAAGAGTGTAATCACTGTTAGAGCAAGAAAGTCTCAAGTTTTCAAGGAACAAATTGAGCAACTAAAAGAAAAGGAAAAAGCCCTAGTTGCTGAAAATGCCATACTCTCTAACAAGTGTGGTATGGTTCGAAATCTAGCAACAAGTAAAACAAATAATAAGGATAAGGATCATCAGAGAAGAGAGAATCACCAAGCTCATCAACACTATGCAGAAAGTAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGACTTCCTGAAACAAGAACAAGGCAACAAATTAATTGA 690 0.3971 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASSSMQETIERYRKHTKDTPAAAKSAEENVQNLKQEAAILMKKIDILEEAKRKFLGEGIGSYSLEDLQQIEQQLEKSVITVRARKSQVFKEQIEQLKEKEKALVAENAILSNKCGMVRNLATSKTNNKDKDHQRRENHQAHQHYAESSSPSSDVETELFIGLPETRTRQQIN 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151295g00002 229 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Stsc151295g00002 229 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Stsc151295g00002 229 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Stsc151295g00002 229 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Stsc151295g00002 229 Coils Coil 80 107 - -
Stsc151295g00002 229 MobiDBLite consensus disorder prediction 181 199 - -
Stsc151295g00002 229 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Stsc151295g00002 229 Pfam K-box region 83 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Stsc151295g00002 229 FunFam MADS-box protein SOC1 14 95 - -
Stsc151295g00002 229 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Stsc151295g00002 229 Coils Coil 143 170 - -
Stsc151295g00002 229 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977|GO:0045944
Stsc151295g00002 229 MobiDBLite consensus disorder prediction 181 212 - -
Stsc151295g00002 229 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Stsc151295g00002 229 SUPERFAMILY SRF-like 3 74 IPR036879 GO:0003677|GO:0046983
Stsc151295g00002 229 Gene3D - 14 96 IPR036879 GO:0003677|GO:0046983
Stsc151295g00002 229 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 193 - -
Stsc151295g00002 229 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151295g00002 Stsc-Chr151295 21861 31292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151295g00002 1 158 MADS-box Gene Family AT2G45660 77.215 1.73e-84 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Stsc151295g00002 K-box 8.3e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151295g00002 - - adu:107475751 330.872