Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151289g00008 ATGTCATCATCACAAGCAGCACCACAAGATAATAACGAAGACGAAGAAGAAATGAATAAGGAGCTCATGTTCGAGAAGGTTCTTACTCCCAGCGACGTCGGCAAGCTCAACCGCCTCGTCATTCCTAAATCACACGCCGAGGCGCATTTCCCCCTCGGCGCCGACGGTTATTCCGCCGACGGAAAAGGCCTGCTTCTCAACTTCGAAGACCACTCGGGAAAACGGTGGAGGTTCCGGTACTCCTACTGGAGCAGCAGCCAGAGCTACGTTCTTACCAAAGGATGGAGCCGTTACGTTAAGGAAAACCACCTTGCTGCCGGCGACGTCGTTTTGTTCAAGAGGCACCGTCTCCATCCAAATAGTTTCTTTGTCAGTTGGAGGCGCCGCCATCCTGGGACCGTGGTCCCGGAACGAGGGAGGAGGAGGAGGGCTGATGAGGGTACCAGTGGTGGTGATGGTGATGGTGACGGTGATGATGGGAACAATGAGAGTGTGGTGGGTGATGCTGCCGTTTCTGTTGGGTGGAGCAGCACTACCGGGTGCTATCCTGCGCTTTCTTATCCTACGCACCACCAGCAACATCCAATGTCCTCGTATGATTCTCAATATTTTCTTCATGCAGGTGGTGAAGGTACAAACGAAACGACAATGGTGGAAATCCCTTTGAGTTCAGGTTCGAGGATGCTGAGGCTGTTCGGGGTGAACATGGAATGCCAAAACCAACAAGAAGAAACACATATTACTAATTATATTAATGTTAATAATAATAGTAATAATAATGATTCTGAAACCTTCTCATCAACCCGGACTCACCACCCCAATTAA 825 0.4982 MSSSQAAPQDNNEDEEEMNKELMFEKVLTPSDVGKLNRLVIPKSHAEAHFPLGADGYSADGKGLLLNFEDHSGKRWRFRYSYWSSSQSYVLTKGWSRYVKENHLAAGDVVLFKRHRLHPNSFFVSWRRRHPGTVVPERGRRRRADEGTSGGDGDGDGDDGNNESVVGDAAVSVGWSSTTGCYPALSYPTHHQQHPMSSYDSQYFLHAGGEGTNETTMVEIPLSSGSRMLRLFGVNMECQNQQEETHITNYINVNNNSNNNDSETFSSTRTHHPN 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151289g00008 274 CDD B3_DNA 23 128 IPR003340 GO:0003677
Stsc151289g00008 274 MobiDBLite consensus disorder prediction 134 165 - -
Stsc151289g00008 274 SUPERFAMILY DNA-binding pseudobarrel domain 21 128 IPR015300 -
Stsc151289g00008 274 Pfam B3 DNA binding domain 24 129 IPR003340 GO:0003677
Stsc151289g00008 274 MobiDBLite consensus disorder prediction 134 150 - -
Stsc151289g00008 274 Gene3D - 12 134 IPR015300 -
Stsc151289g00008 274 ProSiteProfiles B3 DNA-binding domain profile. 24 130 IPR003340 GO:0003677
Stsc151289g00008 274 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 5 252 IPR044800 GO:0003700
Stsc151289g00008 274 SMART B3_2 24 130 IPR003340 GO:0003677
Stsc151289g00008 274 MobiDBLite consensus disorder prediction 252 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151289g00008 Stsc-Chr151289 34954 37350 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151289g00008 20 239 RAV Transcription Factor Family AT5G06250 45.299 2.16e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Stsc151289g00008 B3 1.4e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151289g00008 K09287 - aip:107647035 323.553