Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151289g00006 ATGGCGGCTCTTCGGAGAATGATTGGTTTCGGGGCCAACAGACCTTTGACTCCACCCTCTCTTCTCACTTTCCGCAGGGGAATCGCTTTCAAGCTCTTCGTTGGAGGATTGTCTGTGTACACGACGGAGAAAGGATTGACTGATGCTTTCTCTGGTTGCGGACAAATAATTGAAGCCAAAATCATAACAGACAAGGTATCAGAGAGATCTAAAGGGTTTGGGTTCATCACCTTTGCTTCACGGGACGAGGCTGCAGATGCCATTTCACAGATGAATGGGAAGGCACTAAATGGCCGCGTTATCTTTGTTGATTATGCGAAACCAACGTTTTCCAAGAGTAGTGGAATGCCCATTGCAAGAGGACCTCCTGAAGTCCCCACAGTTGAGAGTTGA 393 0.4784 MAALRRMIGFGANRPLTPPSLLTFRRGIAFKLFVGGLSVYTTEKGLTDAFSGCGQIIEAKIITDKVSERSKGFGFITFASRDEAADAISQMNGKALNGRVIFVDYAKPTFSKSSGMPIARGPPEVPTVES 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151289g00006 130 Gene3D - 27 123 IPR012677 -
Stsc151289g00006 130 SMART rrm1_1 31 104 IPR000504 GO:0003723
Stsc151289g00006 130 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 110 - -
Stsc151289g00006 130 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Stsc151289g00006 130 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 30 108 IPR000504 GO:0003723
Stsc151289g00006 130 SUPERFAMILY RNA-binding domain, RBD 30 120 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151289g00006 Stsc-Chr151289 25166 26786 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151289g00006 30 107 Eukaryotic Initiation Factors Gene Family AT2G23350 33.333 4.20e-08 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151289g00006 - - pvu:PHAVU_001G192800g 172.555