Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151284g00008 ATGGCTGAATCGGACAACGAATCAGGACAAGGAGGTAACGCAGCCGAGTTCAGGGAGCAGGATAGGTTCCTCCCCATAGCTAACGTGAGCAGGATCATGAAGAAGGCACTCCCGGCGAACGCGAAGATCTCGAAAGAGGCTAAGGAGACGGTGCAGGAATGCGTGTCGGAGTTCATAAGCTTCATAACTGGCGAGGCCTCCGATAAGTGCCAGAAGGAGAAGAGGAAGACCATCAACGGTGACGATTTGCTGTGGGCGATGACGACCCTTGGATTTGAGGAATACGTGGAGCCTCTTAAGATATATCTACACAAGTATAGGGAGATGGAAGGTGAGAGGACTGCTTTGATAGGAGGGGGGACCAGCAGTAGGCACCATGGTGGTGGTGGTGGTGACCACAGGAATGATGGCAGCGGCGACGGTGTTGGTGGTGGTGGTGGGATGGTGCCATCACCTATGATGATGATGATGGGGCATCAGCATCAAGGACACATGTTTGGATCTGGTGGAGGGAGTGGATCAGCATCTTCTGGAAGGATGACTAGGTAG 549 0.5319 MAESDNESGQGGNAAEFREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEEYVEPLKIYLHKYREMEGERTALIGGGTSSRHHGGGGGDHRNDGSGDGVGGGGGMVPSPMMMMMGHQHQGHMFGSGGGSGSASSGRMTR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151284g00008 182 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 8 135 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc151284g00008 182 Gene3D Histone, subunit A 12 131 IPR009072 GO:0046982
Stsc151284g00008 182 ProSitePatterns NF-YB/HAP3 subunit signature. 54 70 IPR003956 GO:0005634|GO:0006355|GO:0043565
Stsc151284g00008 182 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Stsc151284g00008 182 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Stsc151284g00008 182 PRINTS CCAAT-binding transcription factor subunit A signature 51 69 - -
Stsc151284g00008 182 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Stsc151284g00008 182 SUPERFAMILY Histone-fold 20 121 IPR009072 GO:0046982
Stsc151284g00008 182 MobiDBLite consensus disorder prediction 119 182 - -
Stsc151284g00008 182 MobiDBLite consensus disorder prediction 167 182 - -
Stsc151284g00008 182 FunFam Nuclear transcription factor Y subunit B-3 12 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151284g00008 Stsc-Chr151284 19240 20484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151284g00008 1 165 CCAAT-HAP3 Transcription Factor Family AT4G14540 69.643 4.43e-71 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc151284g00008 CBFD_NFYB_HMF 1.4e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151284g00008 K08065 - bvg:104903009 209.534