Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151283g00005 ATGAAGATTCAGTGCAACGTGTGTGAGGCTGCTGAGGCTAAAGTTCTGTGCTGTGCTGATGAGGCTGCGCTTTGTTGGGAGTGTGATGAGAAGGTTCATGCTGCTAACAAGCTCGCCAGCAAGCACCAGAGGGTTCCTCTTTCCATGTCTTCTTCTCATATGCCCAAATGTGATATTTGTCAGGAAGCATTTGGCTATTTCTTCTGTCTAGAGGATCGAGCTTTACTGTGTCGGAAGTGTGACGTGGCGATACACACCGCAAATTCGTATGTCTCCGGTCATCAGAGGTTTCTTCTCACTGGTGTAAGAGTAGGCCTAGAAGCAACCGAGCCCGGTGGCACTTCCTCAACTTCTTTGAAGTCAGATTCCGGGGAGAAAGCTTCTGACAAGTCCTCTTCTGTCTCCAGAAAGCTGTCAACGATGCCCCAGTCGTCGGATTACAATGAAATGTTACCACTTGATGCTGGGGGAGTTGGTGAGTTGCAGCCGGCTAAGGTGTCTTATGGCGGTGGTTCTACCACCGGAAATATCTCTCAGTGGCCGATCGATGAATTCCTTGGCCTTAATGATTTCGGTCAAGGTTATAATTACATGGAAGGATCATCGAAGGGTGATAATGGTAAGCTTGGGGATTCTGATTCTCCGGTCCTTAGATCCGCGGAAGAGGAAATGGAAATGGAGGACGGCGACGACTACCTGATCCGCGTTCCAGATTCATCGTGGACAGTTCCACAGGCCCCTTCGCCTCCTACAGCTTCAGGGTTATACTGGCCGAAAGACCCTCCGATTTCATCTGACCATGCTATGTTTGTTCCGGACATATGCTGTTCTCCCATGCAAGAGGCTCGGAGTAGTACCATTTTTTCGAGGCGGCGGAGGCACCACCTTTGA 891 0.4994 MKIQCNVCEAAEAKVLCCADEAALCWECDEKVHAANKLASKHQRVPLSMSSSHMPKCDICQEAFGYFFCLEDRALLCRKCDVAIHTANSYVSGHQRFLLTGVRVGLEATEPGGTSSTSLKSDSGEKASDKSSSVSRKLSTMPQSSDYNEMLPLDAGGVGELQPAKVSYGGGSTTGNISQWPIDEFLGLNDFGQGYNYMEGSSKGDNGKLGDSDSPVLRSAEEEMEMEDGDDYLIRVPDSSWTVPQAPSPPTASGLYWPKDPPISSDHAMFVPDICCSPMQEARSSTIFSRRRRHHL 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151283g00005 296 CDD Bbox1_BBX-like 5 47 - -
Stsc151283g00005 296 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Stsc151283g00005 296 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Stsc151283g00005 296 FunFam B-box zinc finger protein 22 1 93 - -
Stsc151283g00005 296 MobiDBLite consensus disorder prediction 133 147 - -
Stsc151283g00005 296 MobiDBLite consensus disorder prediction 109 154 - -
Stsc151283g00005 296 Gene3D Classic Zinc Finger 1 92 - -
Stsc151283g00005 296 SMART bboxneu5 4 47 IPR000315 GO:0008270
Stsc151283g00005 296 SMART bboxneu5 52 99 IPR000315 GO:0008270
Stsc151283g00005 296 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 274 - -
Stsc151283g00005 296 CDD Bbox1_BBX-like 56 99 - -
Stsc151283g00005 296 Pfam B-box zinc finger 54 95 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151283g00005 Stsc-Chr151283 59423 62112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151283g00005 1 293 C2C2-CO-like Transcription Factor Family AT1G78600 49.080 2.68e-92 275
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Stsc151283g00005 zf-B_box 6.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151283g00005 - - gmx:100790959 454.521