Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151280g00002 ATGGGAAGGTCACCGTGTTGTGATGAGAGTAATGGTAATGTAAAGAAAGGGCCATGGTTGCCAGAGGAGGATCAGAAGCTGATTGATTACATCAACAAGCACGGCCATGGAAGTTGGAGAACACTTGCAAAGCGTGCCGGTCTCAACAGATGCGGTAAGAGCTGCAGACTCAGATGGGCTAACTACCTCAGACCTGATATCAAGAGAGGCAAATTCACCCAAGACGAGGAGAGGATCATCATCAACCTTCATTCCGTTCTCGGAAACAAGTGGTCAAAGATCGCAACACATCTTCCGGGAAGAACTGATAATGAAATAAAGAATTTCTGGAACACTCATATAAGGAAGAAGCTTCTGCAGATGGGTATTGATCCGGAGACACACAAGCCTAGGACGGATTTCAGACACCTCATGAATCTCACACAGTTGCTTGGCATGTCATCAAATATGGGGAATCCTATGATGAACACTTGGGGAGCCAATAACCCTAATATTGGTCTACAAGGAGATGTTACTCAATTAGCCCAACTACAACTGCTGCAAACTCTTTTGCAAATTATGAACAGCAACACATTTGTTAATAATAACCCTAATTTATTCCCCTTAGGAAATCCCAGCTTCATTAATGCATATCTTAATGGGTCAAACTCAAACACCCTTGAAGCTGTGGAACCTTTTGGATTAAAAAGGGAAGAATATGGATCAAACCCTGCTGCTCTATCATCTTACCAATCAAACTATGGGTTTCCAAATACAGTATTGGGTGCACCTAATACACAAGAGCTTGAATGCTATAACAAACTCAGCAACACTACTACTGCTACTTCACATGAGAATGAAGCAGAGATTTATCCATTGTTGCCTGGATTAGTAGCATCCTCTCCAGTCACTGGTGGAACCTGCAGCAGCAGCATGAACCAGATGGACACATCATCAGCTCCAACATCCACGGCTCAGTCACCTAATAATAATAATTCCAACACAATCTTTGATGATTTGGAGAAGCTCCTTCAGGATGATGAAACATGTGCCTCCTACTGGAAAGATATTCTAGACTTGACATCCACATCTGCTTCAGCGAATTATTCGTGGTAG 1095 0.4274 MGRSPCCDESNGNVKKGPWLPEEDQKLIDYINKHGHGSWRTLAKRAGLNRCGKSCRLRWANYLRPDIKRGKFTQDEERIIINLHSVLGNKWSKIATHLPGRTDNEIKNFWNTHIRKKLLQMGIDPETHKPRTDFRHLMNLTQLLGMSSNMGNPMMNTWGANNPNIGLQGDVTQLAQLQLLQTLLQIMNSNTFVNNNPNLFPLGNPSFINAYLNGSNSNTLEAVEPFGLKREEYGSNPAALSSYQSNYGFPNTVLGAPNTQELECYNKLSNTTTATSHENEAEIYPLLPGLVASSPVTGGTCSSSMNQMDTSSAPTSTAQSPNNNNSNTIFDDLEKLLQDDETCASYWKDILDLTSTSASANYSW 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151280g00002 364 FunFam Transcription factor MYB39 71 132 - -
Stsc151280g00002 364 Pfam Myb-like DNA-binding domain 69 113 IPR001005 -
Stsc151280g00002 364 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Stsc151280g00002 364 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Stsc151280g00002 364 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 306 - -
Stsc151280g00002 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Stsc151280g00002 364 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Stsc151280g00002 364 Gene3D - 15 68 - -
Stsc151280g00002 364 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Stsc151280g00002 364 CDD SANT 71 114 IPR001005 -
Stsc151280g00002 364 FunFam MYB-related transcription factor 15 68 - -
Stsc151280g00002 364 Gene3D - 71 118 - -
Stsc151280g00002 364 CDD SANT 18 63 IPR001005 -
Stsc151280g00002 364 MobiDBLite consensus disorder prediction 298 329 - -
Stsc151280g00002 364 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Stsc151280g00002 364 SMART sant 68 116 IPR001005 -
Stsc151280g00002 364 SMART sant 15 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151280g00002 Stsc-Chr151280 63366 65808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151280g00002 1 352 MYB Transcription Factor Family AT4G17785 45.028 1.90e-86 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc151280g00002 Myb_DNA-binding 1.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151280g00002 K09422 - gmx:778082 380.948