Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151280g00001 ATGTCAGAACGGGGTGCATTCTCCGTTGATTCCACCATGGATGGTAGTAATAACAACAAAGGAGGAGGAGGAGAAGAGTTTAAGAAGAAGAAGGAGAATAAGGTCCCTTTTATGAAGCTTTTCTCTTTTGCTGACACTTATGATTGTGTGTTAATGGCCATTGGATCTGTTGGTGCTTGTGTTCATGGTGCCTCTGTTCCTGTTTTCTTCATCTTCTTTGGCAAGTTAATCAATGTCATTGGTTTGGCTTATCTCTTTCCCAAGGAAGCTTCTCACCAAGTTGCTAAGTACTCGTTGGATTTTGTGTATCTAAGTATAGCAATACTATTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACCGGAGAACGGCAAGCAGCAAAGATGAGATTGGCTTATTTAAGATCAATGTTGAATCAAGACATAAGCCTCTTTGATACTGAGTCTTCAACAGGAGAGGTTATTTCTGCCATTACAAGTGACATAATCATAGTTCAAGATGCACTATCTGAAAAGGTAGGGAACTTCATGCACTACATAAGCAGGTTTATAGCTGGGTTCACCATTGGCTTTGTGAGAGTGTGGCAGATTAGTCTTGTCACACTTTCAATAGTACCCTTGATTGCACTTGCTGGAGGACTCTATGCATATGTCACAATTGGCCTCATTGCAAAAGTTCGTAAAGCTTATGTCAGAGCTGGAGAAATTGCTGAAGAGGTGATAGGGAATGTTAGAACGGTTCAAGCATTTGCAGGAGAAGAAAGGGCAGTGAAATCATATAAAGCTGCTCTAATGAACACTTACAAAAACGGTAGGAAAGCTGGATTAGCAAAGGGCCTTGGACTGGGATCAATGCACTGTGTACTTTTCCTGTCATGGGCTTTGCTTGTTTGGTTCACAAGCGTTGTTGTTCACAAGAGAATTGCCAATGGTGGCGAGTCTTTCACCACCATGCTCAATGTTGTCATCTCTGGCCTGTCACTTGGGCAGGCAGCACCTGATATCTCAGCATTTATACGGGCAAAGGCAGCAGCATATCCAATCTTTGAGATGATAGAGAGGGACACAATCAGCAAAAGAAGCTCCGGTCGAAAGCTGCCCAAATTGGAGGGCCGTATCCAATTCAAGAATGTTTGTTTCAGCTATCCGTCTCGCCTGGATGTAACTGTCTTCAACAACCTCTGTCTTGACATTCCTGCAGGGAAGATTGTAGCCCTTGTGGGAGGGAGTGGTTCTGGAAAGAGCACTGTTATATCCTTGATCGAACGCTTCTATGAACCACTTTCAGGTCAGCGAGCTGTCAAGCTTTCAGATGCTCAGTCTTTCATTAACAATCTTCCTGAAAGATTAGACACTCAGGTTGGGGAGAGAGGGATACAGCTATCTGGTGGACAGAAGCAAAGAATCGCGATATCTCGAGCCATAGTGAAGAATCCATCAATCCTGTTGCTGGATGAAGCAACCAGTGCTCTGGATGCTGAGTCTGAGAAGAGTGTGCAGGAGGCTCTTGATCGCGTTATGGTCGGCCGGACAACTGTGATAGTAGCACACAGACTTTCTACAATTAGGAATGCAGATCTGATAGCTGTTGTTCAAGGTGGGAGGATTGTGGAAACTGGAAATCATGAGGAGCTAATGTCCAATCCTACTAGTGTGTATGCCTCTCTTGTTCAACTCCAAGAGGCAAGTTCTCTGCAGCGCCTCCCCTCGGTCGGGCCTAGCCTGGGCCGCCAATCAAGCATAAAGTACTCAAGGGAATTGTCCCGGACAACAACAAGCTTTGGAGGTAGCTTTCGATCGGATAAAGATTCTATTGGGCGAGTCTGCGACGAAGAAAATGCAAGCAAGACAAAGCATGTTTCAGCAAGAAGGCTATATTCTATGATTGGTCCTGACTGGATTTATGGGGTTTTTGGGACATTGTGTGCGTTTGTTGCTGGAGCACAGATGCCACTCTTTGCACTTGGAATCTCTCATGCTCTTGTATCATACTATATGGATTGGGAGACCACAAAACATGAAGTCAAGAAAATTGCTTTCCTCTTCTGTGGAGGAGCAGTCATAACTATCACTGTGCATGCAATTGAGCATCTTTGTTTTGGAATCATGGGAGAGCGCCTCACCCTTCGCGTCCGAGAAAAGATGTTTTCAGCTATTTTGAAGAATGAAATTGGGTGGTTTGATGATACAAGCAACACAAGTTCTATGCTCTCGTCACGTTTAGAGACCGATGCGACTTTGTTACGGACCATAGTTGTTGATCGTTCCACAATTCTCTTGCAGAATATTGCCCTGGTTGTTGCTTCATTCATTATTGCCTTCATGTTGAATTGGAGAATAACTCTTGTTGTCTTGGCCACATATCCTCTGATCATTTGTGGTCACATCAGTGAGAAACTTTTTATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAGGCCAACATGTTAGCCGGGGAAGCTGTGAGCAATATTCGCACCGTTGCTGCATTTTGTTCTGAAGAAAAGGTCCTTGATCTCTATGCTAATGAGCTTGTTGATCCTTCGAAACGTTCCTTTCAACGAGGCCAAATCGCGGGCGTATTTTATGGCATTTCCCAGTTCTTTATTTTCTCATCATATGGCCTTGCCTTGTGGTATGGATCTGTTTTGATGGGGAAGGAGCTTGCAAGCTTTAAATCAGTTATGAAGTCATTTATGGATTTCAATCTGCTTGTTCCTTCAGGCAAGAGTATTGCCTTGGTTGGACAAAGTGGTTCTGGAAAAAGCTCTGTTATCTCCCTCATACTCAGGTTTTATGATCCAATTTCTGGGAAGGTGATGATTGATGGAAAAGACATAAGGAGACTTAATCTGAAATCTCTAAGGAAACACATTGGGCTAGTGCAGCAAGAACCGGCGCTTTTTGCGACATCAATCTACGAAAACATCCTTTATGGGAAAGAAGGAGCCTCTGATTCAGAAGTAATAGAGGCAGCCAAGCTTGCCAATGCTCACAACTTCATAAGTGGCCTTCCAGAGGGATACTCAACCAGAGTTGGGGAGCGAGGAGTGCAGCTATCCGGCGGTCAGCGACAAAGGGTGGCCATAGCCAGAGCAGTCCTAAAGAACCCTGAAATCTTGCTGTTGGATGAGGCGACCAGCGCGCTGGATGTTGAATCGGAGCGCGTGGTTCAACAAGCTTTGGACAGGTTAATGCAGAACAGAACAACGGTTATTGTGGCACATAGGCTCTCCACAATAAGGAATGCAGACCAAATCTCAGTTTTGCAAGATGGGAAAATAATTGAGCATGGCACTCATTCAAGTCTCATAGAAAATAAAAATGGACCATACTTTAAATTAGTCAACCTTCAACAACAACAGCATCAACTATAG 3387 0.4411 MSERGAFSVDSTMDGSNNNKGGGGEEFKKKKENKVPFMKLFSFADTYDCVLMAIGSVGACVHGASVPVFFIFFGKLINVIGLAYLFPKEASHQVAKYSLDFVYLSIAILFSSWTEVACWMHTGERQAAKMRLAYLRSMLNQDISLFDTESSTGEVISAITSDIIIVQDALSEKVGNFMHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVKSYKAALMNTYKNGRKAGLAKGLGLGSMHCVLFLSWALLVWFTSVVVHKRIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFEMIERDTISKRSSGRKLPKLEGRIQFKNVCFSYPSRLDVTVFNNLCLDIPAGKIVALVGGSGSGKSTVISLIERFYEPLSGQRAVKLSDAQSFINNLPERLDTQVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVIVAHRLSTIRNADLIAVVQGGRIVETGNHEELMSNPTSVYASLVQLQEASSLQRLPSVGPSLGRQSSIKYSRELSRTTTSFGGSFRSDKDSIGRVCDEENASKTKHVSARRLYSMIGPDWIYGVFGTLCAFVAGAQMPLFALGISHALVSYYMDWETTKHEVKKIAFLFCGGAVITITVHAIEHLCFGIMGERLTLRVREKMFSAILKNEIGWFDDTSNTSSMLSSRLETDATLLRTIVVDRSTILLQNIALVVASFIIAFMLNWRITLVVLATYPLIICGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNIRTVAAFCSEEKVLDLYANELVDPSKRSFQRGQIAGVFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMDFNLLVPSGKSIALVGQSGSGKSSVISLILRFYDPISGKVMIDGKDIRRLNLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISGLPEGYSTRVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERVVQQALDRLMQNRTTVIVAHRLSTIRNADQISVLQDGKIIEHGTHSSLIENKNGPYFKLVNLQQQQHQL 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151280g00001 1128 CDD ABC_6TM_Pgp_ABCB1_D2_like 627 903 - -
Stsc151280g00001 1128 ProSitePatterns ABC transporters family signature. 462 476 IPR017871 GO:0005524|GO:0016887
Stsc151280g00001 1128 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 374 559 IPR003439 GO:0005524
Stsc151280g00001 1128 PANTHER ABC TRANSPORTER B FAMILY 15 432 IPR039421 -
Stsc151280g00001 1128 Pfam ABC transporter transmembrane region 54 324 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151280g00001 1128 Pfam ABC transporter transmembrane region 639 904 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151280g00001 1128 SUPERFAMILY ABC transporter transmembrane region 40 346 IPR036640 GO:0005524|GO:0016020
Stsc151280g00001 1128 CDD ABC_MTABC3_MDL1_MDL2 899 1122 - -
Stsc151280g00001 1128 MobiDBLite consensus disorder prediction 1 19 - -
Stsc151280g00001 1128 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 53 341 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc151280g00001 1128 Gene3D ABC transporter type 1, transmembrane domain 605 931 IPR036640 GO:0005524|GO:0016020
Stsc151280g00001 1128 Gene3D ABC transporter type 1, transmembrane domain 30 386 IPR036640 GO:0005524|GO:0016020
Stsc151280g00001 1128 Pfam ABC transporter 904 1051 IPR003439 GO:0005524
Stsc151280g00001 1128 ProSitePatterns ABC transporters family signature. 1023 1037 IPR017871 GO:0005524|GO:0016887
Stsc151280g00001 1128 Gene3D - 978 1100 IPR027417 -
Stsc151280g00001 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 365 561 IPR027417 -
Stsc151280g00001 1128 Pfam ABC transporter 393 434 IPR003439 GO:0005524
Stsc151280g00001 1128 Gene3D - 387 434 IPR027417 -
Stsc151280g00001 1128 FunFam ABC transporter B family member 4 893 1127 - -
Stsc151280g00001 1128 Gene3D - 435 569 IPR027417 -
Stsc151280g00001 1128 MobiDBLite consensus disorder prediction 1 27 - -
Stsc151280g00001 1128 Pfam ABC transporter 447 490 IPR003439 GO:0005524
Stsc151280g00001 1128 CDD ABC_6TM_Pgp_ABCB1_D1_like 52 349 - -
Stsc151280g00001 1128 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 887 1120 IPR003439 GO:0005524
Stsc151280g00001 1128 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 902 1122 IPR027417 -
Stsc151280g00001 1128 SMART AAA_5 401 542 IPR003593 GO:0016887
Stsc151280g00001 1128 SMART AAA_5 911 1114 IPR003593 GO:0016887
Stsc151280g00001 1128 SUPERFAMILY ABC transporter transmembrane region 619 903 IPR036640 GO:0005524|GO:0016020
Stsc151280g00001 1128 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 638 903 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151280g00001 Stsc-Chr151280 20576 27207 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151280g00001 25 903 Calmodulin-binding Proteins AT2G36910 44.958 0.0 769
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151280g00001 K05658 - gmx:100819045 1540.78