Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151279g00003 ATGGGAGTCCCAGAGAAGGATCCTCTCTCTCAATTGAGCTTACCTCCTGGTTTTCGGTTCTATCCAACAGATGAGGAGCTTCTTGTTCAGTATTTATGTCGCAAGGTTGCTGGCAACCATTTCTCACTTCCTATCATTGCCGAGATCGATTTGTATAAATTCGACCCTTGGATTCTCCCAGGCAAGGCCATATTTGGGGAGAAAGAATGGTACTTTTTCAGTCCCAGGGATAGGAAGTACCCAAACGGTTCGCGGCCGAATAGGGTTGCCGGCTCTGGATACTGGAAAGCCACCGGAACGGATAAAGTAATCAGTACCGAAGGCAAAAAAGTTGGAATCAAGAAAGCACTTGTTTTCTACATTGGCAAAGCACCCAAAGGGACCAAAACTAATTGGATCATGCACGAGTACCGTCTCCTCAACGGTTCTCAAAAGCGCCTCGGCAGCACCAAGCTAGATGATTGGGTTTTGTGTCGGATATACAAGAAGAACTTGAGCTCATCACAAAAGGCCAATATGCCAAGCTTTTCGAGCAAAGAATGGAGCAATGGATCATCGCCTTCTTCATCGTCTCACATCGACGACATGCTCGAATTGCCGGATATTGATGACCGGAGCTTTGCCTTGCCGCGGGTTAACTCGCTGCAGCAGGAGGAAAAGCTAAACCTTGGCGGCGCAGGCAATAATTTCCCGGACTGGGTCAACTCGGGGGATCTCGACTCGGTTCCTGAGATTGGCCTATCTCAGGGGATAACAGGTTACGATGGAAATGACTTATATGTCCCTTCAGGGTCACAGTTCTGCCACGTCAACACGATGGTTGTGCCGGGTAACCCGACCGAGGAGGAGGTCCAGAGTGGCATTCGGACCCAACGGGTTGATGAGAATTTCACTTTATTTCAACAGAATTCGAATGTATTCACCCACCGGTATTTGACGAGTTCGGGTGACCCGCTCGGATTTGGATACCAAAACCAGCAGTTCGGATTCGGGTTCAGAGAGTGA 1005 0.4896 MGVPEKDPLSQLSLPPGFRFYPTDEELLVQYLCRKVAGNHFSLPIIAEIDLYKFDPWILPGKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKVISTEGKKVGIKKALVFYIGKAPKGTKTNWIMHEYRLLNGSQKRLGSTKLDDWVLCRIYKKNLSSSQKANMPSFSSKEWSNGSSPSSSSHIDDMLELPDIDDRSFALPRVNSLQQEEKLNLGGAGNNFPDWVNSGDLDSVPEIGLSQGITGYDGNDLYVPSGSQFCHVNTMVVPGNPTEEEVQSGIRTQRVDENFTLFQQNSNVFTHRYLTSSGDPLGFGYQNQQFGFGFRE 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151279g00003 334 ProSiteProfiles NAC domain profile. 14 163 IPR003441 GO:0003677|GO:0006355
Stsc151279g00003 334 FunFam NAC domain-containing protein 72-like 23 169 - -
Stsc151279g00003 334 MobiDBLite consensus disorder prediction 169 193 - -
Stsc151279g00003 334 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 204 - -
Stsc151279g00003 334 Pfam No apical meristem (NAM) protein 15 139 IPR003441 GO:0003677|GO:0006355
Stsc151279g00003 334 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
Stsc151279g00003 334 Gene3D NAC domain 23 167 IPR036093 GO:0003677|GO:0006355
Stsc151279g00003 334 MobiDBLite consensus disorder prediction 169 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151279g00003 Stsc-Chr151279 12869 14630 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151279g00003 1 330 NAC Transcription Factor Family AT4G27410 55.714 3.92e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc151279g00003 NAM 4.7e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151279g00003 - - adu:107478293 603.594