Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151278g00002 ATGGCAGCGAGTAGTTTGGGGAGTGTTTCAAGCCTTCTATGTGGAGAGGACAACAACAGCATCTTCGACGAAAATGATTACGGTGGTTGTGGTGCTTCCATCTTGTCGGAGGACACGTGGCATCATCCTAGGTACCATCGAAACCGGAGTCAACAAAATCATGAGGAGTTATTGTGGCAAGTGCGACCACAAGAGCTCAGTGAAGAGTATTTGGGGTTAATGGTGGAGAAAGAGTGTCACCACTTGCCTTGTCAGGATTATCTTCATCGACTCAGAAATGGGAATTTGGATTTTCAGGCCAGAAATCATGCCATTCATTGGATTCAAACGGTTCGAGAGCATTTAGGTTTTGGAGCCCTCTCTGCTTATCTATCCATAAATTTCTTGGATCGTTTTCTTTCTGCATATGAATTACCAAAACAAAGGGTTTGGACAATGCAGTTGTTAGCTGTGGCTTGTTTATCTCTTGCAGCGAAAATAGATGAGACTGATCTTCCTCTCTGCCTTGATTTGCAGGTTGGTGAGTTAAAGTTTGTGTTTGAAGCTAAAACAATCCAAAGAATGGAGCTTATGGTACTTAGCACATTGAGGTGGAGAATGCAATCAGTTACCCCATTCTCCTACATTGACTATTTCCTTTACAAGGTCAATGATGATCAAAATCCAATAAGGGATTCAATTATGAGATCCATCCAACTTATTCTGAGTACTGTAAAAGGGATTGAATTCTTGGAGTTTAGACCATCAGAGATTGCAGCTGCTGTGGCAATAGCTATAGTTAGGGAAACAAAAACAGTGCGCATTGAGAAGGCTATTTCTGTTCTCAATCACCTAGTGGAAAAGGAGAGAGTGTTGAAATGTGTGAAACTAATACAAGAGTTGAGTGGTTTTACAAAGGACAAAACAAGTGCTTCTGTTTCAGCCCCTTGCATACCCCAAAGTCCAATTGGGGTTTTGGATGGTGTGTGCTTAAGCTACAAAAGTGATGACATTAATGCTAATTCATCTTCACATATTACCAGTCCAGATGCTAATAAAAGGAGGAAGCTAAATAATAATAATACCTATGAAGCAGCACCAGCATAG 1086 0.4098 MAASSLGSVSSLLCGEDNNSIFDENDYGGCGASILSEDTWHHPRYHRNRSQQNHEELLWQVRPQELSEEYLGLMVEKECHHLPCQDYLHRLRNGNLDFQARNHAIHWIQTVREHLGFGALSAYLSINFLDRFLSAYELPKQRVWTMQLLAVACLSLAAKIDETDLPLCLDLQVGELKFVFEAKTIQRMELMVLSTLRWRMQSVTPFSYIDYFLYKVNDDQNPIRDSIMRSIQLILSTVKGIEFLEFRPSEIAAAVAIAIVRETKTVRIEKAISVLNHLVEKERVLKCVKLIQELSGFTKDKTSASVSAPCIPQSPIGVLDGVCLSYKSDDINANSSSHITSPDANKRRKLNNNNTYEAAPA 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151278g00002 361 PANTHER CYCLINS 59 299 IPR039361 -
Stsc151278g00002 361 ProSitePatterns Cyclins signature. 101 132 IPR006671 -
Stsc151278g00002 361 FunFam D6-type cyclin 197 289 - -
Stsc151278g00002 361 SMART Cyclin_C_2 203 314 IPR004367 -
Stsc151278g00002 361 MobiDBLite consensus disorder prediction 335 361 - -
Stsc151278g00002 361 SUPERFAMILY Cyclin-like 64 200 IPR036915 -
Stsc151278g00002 361 Gene3D - 74 289 - -
Stsc151278g00002 361 SMART cyclin_7 106 194 IPR013763 -
Stsc151278g00002 361 FunFam D2/4-type cyclin 84 196 - -
Stsc151278g00002 361 Pfam Cyclin, C-terminal domain 203 299 IPR004367 -
Stsc151278g00002 361 CDD CYCLIN_AtCycD-like_rpt2 203 291 - -
Stsc151278g00002 361 CDD CYCLIN_AtCycD-like_rpt1 100 198 - -
Stsc151278g00002 361 Pfam Cyclin, N-terminal domain 73 200 IPR006671 -
Stsc151278g00002 361 Gene3D - 84 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151278g00002 Stsc-Chr151278 14742 18759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151278g00002 68 337 Core Cell Cycle Gene Families AT2G22490 47.122 6.67e-78 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151278g00002 K18810 - gmx:100803873 424.861