Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151277g00003 ATGTTTGATACTGGAGACAGGCAACGGTCAAGAAATACTTTTGTTGGAACACCCTGCTGGATGGCTCCTGAAGTTATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGCATAACAGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAATATCCACCAATGAAAGTTTTGCTTATGACTTTGCAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGATAAGAGATTTTCAAAGTCTTTCAAAGAGTTGGTTGCTACCTGCTTAGTGAAAGACCCTAAAAAACGTCCAACCTCAGATAAGCTCTTAAAGCACCACTTCTTCAAACATGCACGCCCTGTTGAATATCTTGCTCGCACAATTTTAGATGGCCTTGCTCCTTTAGGAGATCGCTTTAGAATGCTGAAGGCAAAAGAGGCAGATTTACTGGTGCAGAACAAGGCTCTTTATGAAGATAAGGACCAATTGTCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTCAACCTGGAGGATTTAAAAAGTCAAGCTGCTCTCATTCAAGATGATGGAACGCCAAATGCAGAAGAGCCAGATATTGGCAAGAAGCAGAAGGATAGATCTGATGACCGAAGGGTCCCAGCAGATGGACTATCTTCTGTATCAGCTAATCATCCAGATGTTGCATCCAGACTGGACAAAGAGGATGGCTTTAACAATATTCAGGATTTGGAGAGTTCACTGCCTTCATTTCCTAGTAAACCTCTTCAAGCACTTAAAGGTTGCTTTGATGTCGGTGAGGAAGATGTCAATAATACCAGTCCAAAAGATTTGGATACTGATTCTGGAAGAAGTAATGAAACTTCTGGGCCAAGTGGTTCATTACCACAAAATGCTATAGCTCAACAAAAAAAGTTTTTGAGCGGTTCTTTGTTGCCTGATAATTTTCCTTCTTCCAAAAAGGTTCCCGATAGTGACAGGGACTATCTACAAAGCAAATTTTCTTCTGATCGGAACCATAGTGGTCCGTTGTTATATCGGCAGAAGAGGGATAGCACCAACCTTCCTCTGGTTGATGATGCATCAGAAGGAGCCATTGTCCAGCGTAAGGGGCGCTTTAAGGTCACATCAGCAGATATCAGTCCAATGGGTCAGGCAAACTGCTGCGCTTATGGCCCAGTTAGTGTAGCTCCTGCTAGTCCACCAAATCTGAACTCCGTGGCTGGCGCTATTCTTCCATCACTGCAGTGCATCTTACAACAGAACAGTTTGCAGAGGGAAGAGCTTATTAAGCTAATAAAGTATGCAGAGCAATCTTATGGCAAGAATGCAGAATCAGCCGATGCAGTTGAATCTTTGCAGGCACCACCGGTGACAAGTAGGGAGCGAGAGCTGTATTTTCAGGTTGTTCAACTCCAACAGAGTCTTGGGAGCCTTGTTGAGGAATTGCAGAGACAAAAGATGAAAAACCTTCAGTTAGAGAAACAGCTGAGCTTAATGGCCAGCAAAGTTGAAAAGTGA 1524 0.4272 MFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKSFKELVATCLVKDPKKRPTSDKLLKHHFFKHARPVEYLARTILDGLAPLGDRFRMLKAKEADLLVQNKALYEDKDQLSQKEYIRGISAWNFNLEDLKSQAALIQDDGTPNAEEPDIGKKQKDRSDDRRVPADGLSSVSANHPDVASRLDKEDGFNNIQDLESSLPSFPSKPLQALKGCFDVGEEDVNNTSPKDLDTDSGRSNETSGPSGSLPQNAIAQQKKFLSGSLLPDNFPSSKKVPDSDRDYLQSKFSSDRNHSGPLLYRQKRDSTNLPLVDDASEGAIVQRKGRFKVTSADISPMGQANCCAYGPVSVAPASPPNLNSVAGAILPSLQCILQQNSLQREELIKLIKYAEQSYGKNAESADAVESLQAPPVTSRERELYFQVVQLQQSLGSLVEELQRQKMKNLQLEKQLSLMASKVEK 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151277g00003 507 MobiDBLite consensus disorder prediction 321 335 - -
Stsc151277g00003 507 ProSiteProfiles Protein kinase domain profile. 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151277g00003 507 Pfam Protein kinase domain 8 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151277g00003 507 Gene3D Transferase(Phosphotransferase) domain 1 1 129 - -
Stsc151277g00003 507 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 488 IPR047173 GO:0043539
Stsc151277g00003 507 MobiDBLite consensus disorder prediction 196 215 - -
Stsc151277g00003 507 MobiDBLite consensus disorder prediction 189 234 - -
Stsc151277g00003 507 Coils Coil 477 507 - -
Stsc151277g00003 507 MobiDBLite consensus disorder prediction 311 349 - -
Stsc151277g00003 507 MobiDBLite consensus disorder prediction 267 298 - -
Stsc151277g00003 507 SUPERFAMILY Protein kinase-like (PK-like) 8 138 IPR011009 -
Stsc151277g00003 507 SMART serkin_6 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151277g00003 Stsc-Chr151277 38486 43831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151277g00003 1 504 MAP Kinase Kinase Kinase Kinase AT5G14720 60.381 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Stsc151277g00003 Pkinase 2.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151277g00003 K08835 - gmx:100778837 769.615