Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151277g00001 ATGTCGGTGATAGTGAGGAACGAGGAAAATCAGTTGTTGCTCCTATGCAAGGGTGCAGACAGTGTAATGTTTGAAAGGCTCTCTGAAAAAGGAAGACAGTTTGAGGCCGAAACCAAAGAGCATATCAAAAGGTATGCCGAAGCAGGCTTAAGAACTCTGGTAATCACATACCGTGAGCTTGATGAAGAAGAATATAAGTTATGGGAAGGGGAGTTCTTAAAGGCCAAAACATCTGTAGGAGCAGACCGAGATGCATTGGTCGATGCGGCTGCCGATAAGATGGAAAGAAACTTGATACTTCTTGGATCTACTGCGGTCGAGGATAGATTGCAAAAGGGGGTTCCTGAATGTATTGAAAGGCTTGCTAAGGCGGGAATCAAGTTATGGGTTTTGACCGGGGACAAGATGGAAACAGCAGTCAACATAGGGTATGCTTGCGGTTTACTTAGGCAAGACATGAAGAAGATAGTGATCACTCTAGATTCGCCTAATATTATAGCACTTGAAAAGCAAGGGGATAAGGATGCCCTAAGAAAGGAATCCCTTGAAAGCATAAAGAAGCAAATTGGAGAGGGAATTAAGCAAATCAAGTTTGCGAAAGAGAGTACTAATACAGATAAAGAGAGTTCTTCTTCATTTGGTTTGATAATTGATGGGAAGTCCTTGGATTATTCGCTTAGCAAGAACTTGGAGAAATCCTTCTTTGAGTTGGCAACTAGTTGTGCTTCTGTCATATGTTGCCGATCATCACCGAAGCAGAAAGCTCGTGTTACCAAAATGGTAAAATTAGGAACAGGGCAGACAACATTATCCATTGGCGATGGGGCGAATGATGTTGGCATGCTTCAGGAGGCCGATATTGGAGTTGGCATTAGTGGTGCCGAAGGGATGCAGGCTGTAATGGCAAGTGATTTTGCAATAGCTCAATTCCGTTTTCTGGAGCGATTGTTGTTGGTACACGGACACTGGTGTTATAGGCGAATATCGATGATGATATGCTATTTCTTCTACAAAAACATTGCCTTTGGATTCACCTTATTTTGGTTCGAGGCGTATGCTTCGTTCTCTGGTCAAGCTGCGTACAATGATTGGTACATGTCATTCTACAATGTCTTCTTCACTTCACTTCCAGTTATTGCTCTAGGTGTTTTTGATCAAGATGTTTCTGCTAAGCTTTGCTTAAAGTATCCCTTTCTATATCTAGAGGGAGTAGAGGACACCCTCTTCAGCTGGCCGCGCATTATCGGCTGGATGGTCAATGGAGTTGTTAGCTCCTTAGCCATATTCTTCTTGACTGCAAACTCTGTCATGACTCAATCCTTCAGAAGAGATGGTCAAGTGATCGATTTCGAGATACTCGGCGTCACGATGTACACATGCGCGGTGTGGACAGTGAATTGCCAAATGGCACTTTCAATCAATTACTTTACTTGGATCCAGCATTTTTTCATCTGGGGTAGCATTGCATTCTGGTACCTATTCGTGATGGTTTACGGTTACCTCTCGCCGGAAATATCGACGACGGCTTACATGGTGTTTGTGGAAGCATGTGCTCCTAGCTTGCTATATTGGCTAGTTACCCTTTTGGTGGTTGTGTGTTCTCTTCTACCTTATTTTTGCTATAGATCATTCCAAAGTAGGTTTCTACCAATGTACCATGATATTATTCAGA 1672 0.4294 MSVIVRNEENQLLLLCKGADSVMFERLSEKGRQFEAETKEHIKRYAEAGLRTLVITYRELDEEEYKLWEGEFLKAKTSVGADRDALVDAAADKMERNLILLGSTAVEDRLQKGVPECIERLAKAGIKLWVLTGDKMETAVNIGYACGLLRQDMKKIVITLDSPNIIALEKQGDKDALRKESLESIKKQIGEGIKQIKFAKESTNTDKESSSSFGLIIDGKSLDYSLSKNLEKSFFELATSCASVICCRSSPKQKARVTKMVKLGTGQTTLSIGDGANDVGMLQEADIGVGISGAEGMQAVMASDFAIAQFRFLERLLLVHGHWCYRRISMMICYFFYKNIAFGFTLFWFEAYASFSGQAAYNDWYMSFYNVFFTSLPVIALGVFDQDVSAKLCLKYPFLYLEGVEDTLFSWPRIIGWMVNGVVSSLAIFFLTANSVMTQSFRRDGQVIDFEILGVTMYTCAVWTVNCQMALSINYFTWIQHFFIWGSIAFWYLFVMVYGYLSPEISTTAYMVFVEACAPSLLYWLVTLLVVVCSLLPYFCYRSFQSRFLPMYHDIIQ 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151277g00001 557 Pfam Phospholipid-translocating P-type ATPase C-terminal 300 550 IPR032630 -
Stsc151277g00001 557 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 112 IPR023299 GO:0000166
Stsc151277g00001 557 FunFam Phospholipid-transporting ATPase 100 312 - -
Stsc151277g00001 557 NCBIfam phospholipid-translocating P-type ATPase 1 557 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Stsc151277g00001 557 SUPERFAMILY Calcium ATPase, transmembrane domain M 155 549 IPR023298 -
Stsc151277g00001 557 Gene3D - 1 100 IPR023299 GO:0000166
Stsc151277g00001 557 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 557 - -
Stsc151277g00001 557 NCBIfam HAD-IC family P-type ATPase 243 355 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Stsc151277g00001 557 SUPERFAMILY HAD-like 94 320 IPR036412 -
Stsc151277g00001 557 Gene3D - 101 312 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151277g00001 Stsc-Chr151277 1 4459 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151277g00001 1 556 Primary Pumps ATPases AT3G27870 75.000 0.0 894
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151277g00001 K01530 - gmx:100817020 991.49