Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151275g00007 ATGAACGACGACATGAACGACATTAACAACTACTCCTCCATCTCTGCTCATTCAGGTTGTCCTCCCGACATAGATCATGCATGCTTGGTTGCGGTTGGTAGCAGTGTTGGTGTTGAGTTTGCAGCTTCATCTTCTTCTTCATCATCATCATCTCTTACTCGGATACGCAAACCTAGAAAGAAGAAGAGCACCAAATTGATAAGCATAATGGAGGAAGAAGGGGTGGTGAAAGGAGGTAATAAGGGTGGTGGTGGTGGATACAAGAAGCCAGATACGGCGGCGGGGGCGGAGGAGGCACCAAAGATCGCCCGTCCATGCACCGAGTGCGGCAAGAAATTCTGGTCATGGAAGGCTCTATTCGGCCACATGCGGTGCCACCCTGAGCGCCAGTGGCGAGGCATTAATCCTCCCCCGAATCTCATCAGATCAAAACCACCATCTCAAGAAGAAGACAAGACTCGCGGCCTCACGCCGGAGGATCACGAGGTTGCCACGTGTCTGCTTTTGCTAGCGAGGAGTAGTGGGAGGGAGAAGGCTAAAAGAGAAGAAGATGAGTCCAACAAAGTGGAGAACAATGTGGAGTGTGGAATCAATTCTCATTGCAAAGAGGAAGAAGAGCGGTTTGAGTGCTCCAGTTGCAAGAAAGTGTTTGGATCTCATCAAGCACTTGGTGGGCACAGAGCAAGTCACAAGAATGTCAAGGGATGCTTCGCCATAACCCGGACCACCGCCGAGGGAGGAGGAGACCAACGCCACCACCATGATCATCATCATTTACTAAACATCAACCTCCTCACGCATGGTGACAACGAGGACGACAACGCCGCCGCCGCCGTTGCCGGAGGAGGAGGGCACAAGTGTAGCATATGTATGAAGGTGTTCTCCACAGGACAGGCTCTAGGTGGACACAAGAGGTGTCATTGGGAGAAAGCTGAGAGTGAGAGTGGTAATGATGGATCAACGCTAACACTCCCTCTCCCTGTTGACCTGAATTTGCCTGCTCCTATTGATCAACAACACTACCATTGCTCTTCTTCTTCAACACTCACTTTGGATTTGAGGTTGGGTCTTTAA 1074 0.5065 MNDDMNDINNYSSISAHSGCPPDIDHACLVAVGSSVGVEFAASSSSSSSSSLTRIRKPRKKKSTKLISIMEEEGVVKGGNKGGGGGYKKPDTAAGAEEAPKIARPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNLIRSKPPSQEEDKTRGLTPEDHEVATCLLLLARSSGREKAKREEDESNKVENNVECGINSHCKEEEERFECSSCKKVFGSHQALGGHRASHKNVKGCFAITRTTAEGGGDQRHHHDHHHLLNINLLTHGDNEDDNAAAAVAGGGGHKCSICMKVFSTGQALGGHKRCHWEKAESESGNDGSTLTLPLPVDLNLPAPIDQQHYHCSSSSTLTLDLRLGL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151275g00007 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 285 312 IPR013087 -
Stsc151275g00007 357 ProSitePatterns Zinc finger C2H2 type domain signature. 106 126 IPR013087 -
Stsc151275g00007 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Stsc151275g00007 357 MobiDBLite consensus disorder prediction 43 63 - -
Stsc151275g00007 357 Pfam C2H2-type zinc finger 285 309 - -
Stsc151275g00007 357 Pfam C2H2-type zinc finger 105 128 - -
Stsc151275g00007 357 Pfam C2H2-type zinc finger 207 231 - -
Stsc151275g00007 357 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Stsc151275g00007 357 ProSitePatterns Zinc finger C2H2 type domain signature. 287 307 IPR013087 -
Stsc151275g00007 357 SUPERFAMILY beta-beta-alpha zinc fingers 284 310 IPR036236 -
Stsc151275g00007 357 ProSiteProfiles Zinc finger C2H2 type domain profile. 104 131 IPR013087 -
Stsc151275g00007 357 SUPERFAMILY beta-beta-alpha zinc fingers 105 230 IPR036236 -
Stsc151275g00007 357 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 45 357 - -
Stsc151275g00007 357 MobiDBLite consensus disorder prediction 134 157 - -
Stsc151275g00007 357 Gene3D Classic Zinc Finger 104 230 - -
Stsc151275g00007 357 SMART c2h2final6 208 230 IPR013087 -
Stsc151275g00007 357 SMART c2h2final6 104 126 IPR013087 -
Stsc151275g00007 357 SMART c2h2final6 285 307 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151275g00007 Stsc-Chr151275 44369 45442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151275g00007 88 357 C2H2 Transcription Factor Family AT4G35280 46.739 8.10e-71 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Stsc151275g00007 zf-C2H2_6 4.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151275g00007 - - aip:107643999 351.673