Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151268g00009 ATGGGTGTTCTCCACTCTACACTCCTGTGCTTCATTTTACTACATTCATGGAAGATTGCAGCTTACAGTGATGAAGATTGGAAGAAAGCCACTGCAACATTCACCAAAGACACTGATGAGGGATCTCTCATTAATGAAGGAGCTTGTGGGTATGGAGATATTCACAAGGCTAGTTATGGAAAACACAGTGCTGGGTTGAGCACAATTTTGTTCAGCAGAGGGAGTGCTTGTGGGGCTTGCTATGAGATAAGGTGTGTTGACCACATCTTGTGGTGTGTTATGGGAAGCCCTTCTATTGTTGTCACT 306 0.4412 MGVLHSTLLCFILLHSWKIAAYSDEDWKKATATFTKDTDEGSLINEGACGYGDIHKASYGKHSAGLSTILFSRGSACGACYEIRCVDHILWCVMGSPSIVVT 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151268g00009 102 SUPERFAMILY Barwin-like endoglucanases 14 91 IPR036908 -
Stsc151268g00009 102 Gene3D - 13 102 IPR036908 -
Stsc151268g00009 102 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 102 IPR007112 -
Stsc151268g00009 102 PANTHER EXPANSIN-A15 15 102 IPR002963 GO:0009664
Stsc151268g00009 102 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Stsc151268g00009 102 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Stsc151268g00009 102 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151268g00009 Stsc-Chr151268 68224 68749 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151268g00009 4 102 Expansin Gene Family AT4G38210 51.000 3.39e-31 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151268g00009 - - ahf:112789777 197.208