Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151265g00002 ATGCATCACGAAGTTATAAACCCTAATCATCACAATAATCTTCAACACATTTCTCTAGAATTATCTTTGATTTCTTGTAACTTACAACAAATCAAAACTACCAACCATGGCGGACCAAGAAATTTGAAGGCAAGGAAGAAACCAAACCTAAGAAATCCCAAGAAAAGCTGCTGCACCAGCAGGTGGGGGTGTTCAACATCACTGGAGCTGTACGACAATCCATGGAAGATCAAGAAAAAGCTGACGGCGAGCGATCTCGGGAAGCTGAACCGGCTCCTATTCGGGTCCGATTTGCTGGAGAACTTGATGGTTCCGGTGCTGAGCGAGGAAGCACAAAGGGAAGTGGAGTGCGGCATGGGAACCCCAATTAGGGTTTGGGATGTGGATACCATGTCCATGCACCATCTTATTCTGAAGCGTTGGGCTTCTTTCAAGAACTATGTGTTGATTGGGAAATGGAATAAAGATTTCGTGAGAAGAAGGGAGTTGAAGAAAGTTGATGTTGTTGGCCTTCACTGGGACTCTTCAACTTTTCCGTCACAGATAAAAGGGCATGCATTTGAATAA 567 0.4427 MHHEVINPNHHNNLQHISLELSLISCNLQQIKTTNHGGPRNLKARKKPNLRNPKKSCCTSRWGCSTSLELYDNPWKIKKKLTASDLGKLNRLLFGSDLLENLMVPVLSEEAQREVECGMGTPIRVWDVDTMSMHHLILKRWASFKNYVLIGKWNKDFVRRRELKKVDVVGLHWDSSTFPSQIKGHAFE 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151265g00002 188 SUPERFAMILY DNA-binding pseudobarrel domain 73 176 IPR015300 -
Stsc151265g00002 188 CDD B3_DNA 75 174 IPR003340 GO:0003677
Stsc151265g00002 188 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 46 176 - -
Stsc151265g00002 188 Gene3D - 72 185 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151265g00002 Stsc-Chr151265 17384 18355 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151265g00002 29 172 RAV Transcription Factor Family AT1G50680 26.000 2.81e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151265g00002 - - lja:Lj6g3v1382150.1 207.994