Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151262g00017 ATGGAGCAGTGCTGGGACAACTGGCCTCTTCACACGGAACAGGAAATAGATGATTATGGAGATTCCTTGTCATTATTGGAGGAGTGGCAGCAGCAGAAGCCACCTGATGATGATGACGATCACGATGACAATTTCCTCAGAGAAATCCTGCAGACGCCACCACCTGATGATCTCCTCGGCACTGCGGAGGGAAAAAGGGATGGTGCTGCACTGTCAAGGTCAAGGACATGCATTCTGTCGTTCGATAACTCAACCATAATAGCAGCAGAGCAAGAAGAAGGTCCAAAGAAACGACGGCAGCAAGCAATAAGGAAGAAGGAGCAGGAAGGAGCAGCAAAGAAGAGCCGAAACGACTCTCAGATTCTGGATCACATTATATCTGAGAGAAAAAGAAGACAACAACTCACCCAGATGTTCATAGCACTCTCTGCCACTATTCCTGGCTTGAAGAAGACGGACAAGGCTTCTATACTTGGGGAAGCTATCAATTACGTGAAACAGCTTCAAGAACGTGTGAGGGAGCTGGAAAAGCGAAGCAAGGAGAAGAAGGGCCCACCAGAGCCACCACCAGTCGTATTATTCCAGAAGAAGAAGAAGACTAGTGATGATGATGAGGATGATGAAGAAGTAGTACAAGAACAGGTGCTCCCTGATGTTGAAGCTAGAGTGCTGGAGAAGGAGAAGGAGGTGCTGATTGAGATCCACTGCGAGAAAGAGAATGGAATTGAGGTGAAGATATTGGAAGAGCTTGAAAATGTTCATCATCTCAGTGTCACAGGAAGCAGCATTTTGCCCTTTGGGAATTCCACTCTTGGGATCACCATCATTGCCAAGATGCCTACTCATCATGCCCCCTACACAATCACACTCCCTCATCTCCTCACTAATTTACGCCAATTCCTACTTTCATCATCATCAACACTCACTAACTGA 933 0.4673 MEQCWDNWPLHTEQEIDDYGDSLSLLEEWQQQKPPDDDDDHDDNFLREILQTPPPDDLLGTAEGKRDGAALSRSRTCILSFDNSTIIAAEQEEGPKKRRQQAIRKKEQEGAAKKSRNDSQILDHIISERKRRQQLTQMFIALSATIPGLKKTDKASILGEAINYVKQLQERVRELEKRSKEKKGPPEPPPVVLFQKKKKTSDDDEDDEEVVQEQVLPDVEARVLEKEKEVLIEIHCEKENGIEVKILEELENVHHLSVTGSSILPFGNSTLGITIIAKMPTHHAPYTITLPHLLTNLRQFLLSSSSTLTN 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151262g00017 310 MobiDBLite consensus disorder prediction 28 67 - -
Stsc151262g00017 310 Gene3D - 107 183 IPR036638 GO:0046983
Stsc151262g00017 310 Pfam Helix-loop-helix DNA-binding domain 124 169 IPR011598 GO:0046983
Stsc151262g00017 310 MobiDBLite consensus disorder prediction 31 47 - -
Stsc151262g00017 310 Coils Coil 158 178 - -
Stsc151262g00017 310 PANTHER BHLH TRANSCRIPTION FACTOR 73 301 - -
Stsc151262g00017 310 MobiDBLite consensus disorder prediction 91 120 - -
Stsc151262g00017 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 191 IPR036638 GO:0046983
Stsc151262g00017 310 MobiDBLite consensus disorder prediction 175 212 - -
Stsc151262g00017 310 MobiDBLite consensus disorder prediction 90 120 - -
Stsc151262g00017 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
Stsc151262g00017 310 SMART finulus 125 174 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151262g00017 Stsc-Chr151262 67215 68682 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151262g00017 103 301 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.118 1.14e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151262g00017 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151262g00017 - - adu:107459735 306.605