LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151262g00016	ATGTCTACTAGCTGGCGTTCCAGCACTGCCGTTTCAACACCGCCAATCCCAATCTCAATTCCAAATCCCGACGAGGAGGAGCCTTCATCATTCTCCACCTCCGTCTTCAACTTCTCCTCTGGAAACCCTAGGATCGAGGAGACCCGAGGCCTCATGCATCTCTTCCCCGACCAAGATCCCCCTTCTTCCCTCCCTTTTGGACGCAAACCCCTCGTCTGCGTCGTCGGCGTCCCCAATCACATGACCTATGCCGACTTCTGCCAGTTCTGTGGTTCCTTCCTCACCCACATCCTTGAGATGCGCATTGTCAGAATGGATGGAACTGAAGACCAGTATAGTGTTTTGATCCGCTTCGACGATCAAGACTCCACCGACAGCTTCTTTAATCATTACAACGGCCGCCGTTTCTCCTCTCTCGAGGTTGAGGTTTGCCGTGTTCTTTTCACGTTGGATGTGCAGTACACTGGTTCCATTGAACATGCTCAACCATCCAATGCTACCTCCACTGAACAGCCCACATGTCCAGTTTGCCTTGAGCGATTAGATCAAGACACAAGTGGAATTCTCACTACTATATGTAACCATTCTTTCCATTGTTCATGCATTTCAAAATGGGCTGATTCTTCTTGCCCTGTGTGCCGCTATTGCCAACAGCAAGCTGAAAAATCTATTTGTTCCGTTTGTCGGACCACTGAGAACCTTTGGATATGTGTTATATGCGGGTTTGTTGGCTGTGGAAGATATAAAGCAGGACATGCCATCATACACTGGAAAGAGACACAGCATTGTTATTCCCTAGATGTGGAAACAAAGCGTGTGTGGGATTTTGTGGGAGACAACTATGTTCATCGACTTATTCAGTCCAAAACCGATGGGAAGTTGGTTGAGCTGAACACGCACTGTGTTCATGCAGAGAATGGATGTGGAAGTTGCAGCTGTGAAGATAACTCTATGAGCGAGGCGATACTTAATAGTAAAGTTGAAGCTATTGTCAACGAGTACAATGAATTGCTTGCTACTCAACTTGAGAACCAAAAATCTTATTTTGAGTCGTTGTTACAAGAAGTAAAAGAAGAAACTGAGAGACGAATCTCTAAAGCTGTTCAGAAGGCTGTCAGTCTTAAACGACAGAAGATTCAGGCCAAGATTGACAGATGTAACAAAGAGAAGAAATTTCTGGAGGAGCTTAATGAGAATCTTGTTAAAAATGAGGAAGTTTGGAAAGCAAAGTTGCTTGAGATTGAGAAGAGGGGGAGAAAATTCTTAAAACGATCGGAGGAGAGAGTAGCAGGCCTGGAAGAGCAGCTTAGAGATCTCATGTCTTGTCTAGATGATGGGAAGCCGGAAGAACAAAAGTTGCCTGCAACGAACGAAATCAAAGATGGGATTGTATCTGCCTCATCAAAAGAATCCTCGTCAACTGCTAACTCTGAGCTTGGAAAAAATCCATAA	1452	0.4525	MSTSWRSSTAVSTPPIPISIPNPDEEEPSSFSTSVFNFSSGNPRIEETRGLMHLFPDQDPPSSLPFGRKPLVCVVGVPNHMTYADFCQFCGSFLTHILEMRIVRMDGTEDQYSVLIRFDDQDSTDSFFNHYNGRRFSSLEVEVCRVLFTLDVQYTGSIEHAQPSNATSTEQPTCPVCLERLDQDTSGILTTICNHSFHCSCISKWADSSCPVCRYCQQQAEKSICSVCRTTENLWICVICGFVGCGRYKAGHAIIHWKETQHCYSLDVETKRVWDFVGDNYVHRLIQSKTDGKLVELNTHCVHAENGCGSCSCEDNSMSEAILNSKVEAIVNEYNELLATQLENQKSYFESLLQEVKEETERRISKAVQKAVSLKRQKIQAKIDRCNKEKKFLEELNENLVKNEEVWKAKLLEIEKRGRKFLKRSEERVAGLEEQLRDLMSCLDDGKPEEQKLPATNEIKDGIVSASSKESSSTANSELGKNP	483

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151262g00016	483	PANTHER	BRCA1-ASSOCIATED PROTEIN	26	476	-	-
	Stsc151262g00016	483	MobiDBLite	consensus disorder prediction	444	483	-	-
	Stsc151262g00016	483	MobiDBLite	consensus disorder prediction	1	15	-	-
	Stsc151262g00016	483	Pfam	BRCA1-associated protein 2	65	161	IPR011422	-
	Stsc151262g00016	483	Pfam	Zn-finger in ubiquitin-hydrolases and other protein	225	284	IPR001607	GO:0008270
	Stsc151262g00016	483	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	150	215	IPR013083	-
	Stsc151262g00016	483	SMART	ring_2	174	213	IPR001841	-
	Stsc151262g00016	483	MobiDBLite	consensus disorder prediction	461	483	-	-
	Stsc151262g00016	483	SUPERFAMILY	RING/U-box	190	289	-	-
	Stsc151262g00016	483	Coils	Coil	422	442	-	-
	Stsc151262g00016	483	ProSiteProfiles	Zinc finger RING-type profile.	174	214	IPR001841	-
	Stsc151262g00016	483	CDD	RING-H2_BRAP2	172	215	IPR047243	-
	Stsc151262g00016	483	ProSiteProfiles	Zinc finger UBP-type profile.	208	301	IPR001607	GO:0008270
	Stsc151262g00016	483	MobiDBLite	consensus disorder prediction	1	33	-	-
	Stsc151262g00016	483	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	216	297	IPR013083	-
	Stsc151262g00016	483	Coils	Coil	339	403	-	-
	Stsc151262g00016	483	Pfam	Ring finger domain	173	214	IPR001841	-
	Stsc151262g00016	483	SMART	Zf_UBP_1	224	273	IPR001607	GO:0008270
	Stsc151262g00016	483	CDD	RRM_BRAP2_like	72	153	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151262g00016	Stsc-Chr151262	61711	64984	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151262g00016	170	214	C3H Transcription Factor Family	AT1G72220	48.936	2.68e-07	50.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151262g00016	K10632		-	gmx:100794688	771.155