Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151262g00008 ATGGCCGTTATTTCTCTCTCCCTTGTCCCTTCTCTTCTCCCACCTTCTTCTTCGCCTTCGCCTTCGCCTTCGTCTTCTTCCTGCTTCTGTGGGGGGATCCCTCTTCGTTCCCACAAAAGCTTCCTTTCCATTCACTCTGCTTCTCCCTTTCCTTCTCTCGCTTCTAACCCCAAGTTCTCCGGCTCTGGCCGCCGATTTCACACGGTGGTTTCTGCCTCCGCTGACTACTATGCTACTCTTGGAGTCCCCAAATCCGCAACGGGCAAGGAAATCAAAGCTGCTTATCGAAGGTTAGCCCGTCAGTACCATCCCGATGTAAACAAGGAGCCCGGAGCAACTGAAAAATTCAAAGAGATCAGTGCTGCTTATGAGGTGCTATCAGATGATAAGAAGAGGGCTTTGTATGATCAATATGGCGAGGCAGGAGTTAAAAGTACTGTTGGAGGAGGATCAAGCGCCTATACGACCAATCCATTTGATTTATTTGAGACGTTTTTTGGGCCAAGTATGGGTGGCTTTGGTGGCATGGATCCTACTGGATTTGGAACACGTCGAAGTACTGTTACCAAGGGTCAAGACATCCGGTATGATTTCTCCTTGACATTTTCTGAAGCGATTTTCGGAACAGAAAAGGAATTTGAGCTTTCCCATTTGGAAACATGTGAAGTCTGTAGTGGTACTGGAGCAAAGATAGGCTCAAAGATGAGAATATGTTCAACTTGTGGTGGGAGGGGTCAGGTGATGAGGACTGAACAAACACCTTTCGGATTGTTCTCACAGGTTTCAGTATGCCCAGCCTGTGGAGGCGATGGTGAAATCATATCTGAATATTGCCGCAAATGCAGTGGTGAAGGACGTTTACGGGTTAAGAAAAATATCAAAGTTAAAGTTCCTCCAGGTGTTAGCTCAGGCAGTATTCTTAGAGTTACTGGGGAAGGTGATGCAGGACCAAGGGGGGGTCCTCCAGGAGATCTCTATGTCAAGACGGTTGAAGGCACTTCTGAACTACAAATACCTCCTGGCACCCAACCTGGTGATGTCCTTGTTCTTGCAAGAAAAGGTGTGCCGAAACTAAACAAACCATCTATACGTGGTGACCACTTATTCACAGTTAAAGTTACAATACCAAAACGTGTTAGCACAAAGGAGCGTGAGTTGCTTGAAGAACTTGCTTCTCTAGGAGACACAAGTGGCCGTTCAAAATCCCGTTCTAGAACTCATTCTTCCACAGCAAGTAGGGAAGCTCCTCCAGCTCAAAGGGTCGAAAGTTCAACAACAACAGTTGAGGAAAAAACTGAACAATCAGAAGACCAAAATGATTTATGGAATAAATTGAAGGACTTAGCTGGGTCAGTGGCCAATGGAGCCCTTAAGTGGCTGAAAGATAATCTCTAG 1395 0.4631 MAVISLSLVPSLLPPSSSPSPSPSSSSCFCGGIPLRSHKSFLSIHSASPFPSLASNPKFSGSGRRFHTVVSASADYYATLGVPKSATGKEIKAAYRRLARQYHPDVNKEPGATEKFKEISAAYEVLSDDKKRALYDQYGEAGVKSTVGGGSSAYTTNPFDLFETFFGPSMGGFGGMDPTGFGTRRSTVTKGQDIRYDFSLTFSEAIFGTEKEFELSHLETCEVCSGTGAKIGSKMRICSTCGGRGQVMRTEQTPFGLFSQVSVCPACGGDGEIISEYCRKCSGEGRLRVKKNIKVKVPPGVSSGSILRVTGEGDAGPRGGPPGDLYVKTVEGTSELQIPPGTQPGDVLVLARKGVPKLNKPSIRGDHLFTVKVTIPKRVSTKERELLEELASLGDTSGRSKSRSRTHSSTASREAPPAQRVESSTTTVEEKTEQSEDQNDLWNKLKDLAGSVANGALKWLKDNL 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151262g00008 464 SUPERFAMILY HSP40/DnaJ peptide-binding domain 327 387 IPR008971 GO:0006457|GO:0051082
Stsc151262g00008 464 Pfam DnaJ C terminal domain 327 376 IPR002939 -
Stsc151262g00008 464 ProSiteProfiles dnaJ domain profile. 75 139 IPR001623 -
Stsc151262g00008 464 Hamap Chaperone protein DnaJ [dnaJ]. 72 448 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Stsc151262g00008 464 Gene3D - 329 408 - -
Stsc151262g00008 464 Gene3D DnaJ domain 72 176 IPR036869 -
Stsc151262g00008 464 CDD DnaJ 75 128 IPR001623 -
Stsc151262g00008 464 MobiDBLite consensus disorder prediction 395 425 - -
Stsc151262g00008 464 PRINTS DnaJ domain signature 111 131 IPR001623 -
Stsc151262g00008 464 PRINTS DnaJ domain signature 95 110 IPR001623 -
Stsc151262g00008 464 PRINTS DnaJ domain signature 131 150 IPR001623 -
Stsc151262g00008 464 PRINTS DnaJ domain signature 77 95 IPR001623 -
Stsc151262g00008 464 CDD DnaJ_zf 221 285 IPR001305 GO:0031072|GO:0051082
Stsc151262g00008 464 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 329 IPR008971 GO:0006457|GO:0051082
Stsc151262g00008 464 Pfam DnaJ central domain 221 285 IPR001305 GO:0031072|GO:0051082
Stsc151262g00008 464 SUPERFAMILY Chaperone J-domain 71 181 IPR036869 -
Stsc151262g00008 464 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 208 288 IPR036410 -
Stsc151262g00008 464 CDD DnaJ_C 192 378 - -
Stsc151262g00008 464 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 27 404 - -
Stsc151262g00008 464 Gene3D - 189 328 - -
Stsc151262g00008 464 FunFam Chaperone protein dnaJ A6 chloroplastic 221 285 - -
Stsc151262g00008 464 ProSiteProfiles Zinc finger CR-type profile. 208 290 IPR001305 GO:0031072|GO:0051082
Stsc151262g00008 464 FunFam Chaperone protein dnaJ A6 chloroplastic 72 178 - -
Stsc151262g00008 464 FunFam Putative Mitochondrial DnaJ chaperone 279 327 - -
Stsc151262g00008 464 SMART dnaj_3 74 131 IPR001623 -
Stsc151262g00008 464 Gene3D - 213 289 - -
Stsc151262g00008 464 MobiDBLite consensus disorder prediction 426 440 - -
Stsc151262g00008 464 Pfam DnaJ C terminal domain 194 328 IPR002939 -
Stsc151262g00008 464 ProSitePatterns Nt-dnaJ domain signature. 116 135 IPR018253 -
Stsc151262g00008 464 MobiDBLite consensus disorder prediction 391 440 - -
Stsc151262g00008 464 Pfam DnaJ domain 75 136 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151262g00008 Stsc-Chr151262 31994 36822 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151262g00008 76 182 C2H2 Transcription Factor Family AT1G74250 37.719 1.20e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151262g00008 K03686 - gmx:100798567 719.153