Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151262g00005 ATGGCATTCTGCCCCATGTTTTGTTGCGGAAATGTTTCTGATCGCAAGACACGGGGGAAGAAACAACCTCCATGGAGGGTGTTTTCTCTGAAGGAATTACATTCAGCTACCAATAATTTCAACTATGATAACAAGCTCGGAGAAGGTGGATTCGGGAGTGTCTACTGGGGCCAGCTTTGGGATGGATCACAGATTGCTGTGAAAAGATTGAAAGTTTGGAGCAGCAAAGCTGACATGGAATTTGCTGTTGAAGTTGAGATATTGGCAAGGGTTCGACACAAGAATCTTCTAAGTCTGCGTGGCTATTGTGCTCAAGGTCAGGAACGATTAATTGTATATGACTATATGCCCAATTTGAGCCTACTCTCTCATCTTCATGGCCACCACTCTGCTGAATGCCTTCTTGATTGGAAGCGACGGATGATTATTGCAATCGGCGCTGCTGAGGGAATTGCATATCTTCACCACCAAGCAACACCACACATCATTCATAGGGATATCAAAGCAAGCAATGTGTTGTTGGATTCAGATTTCCATGCACAGGTTGCTGATTTTGGTTTCGCCAAGCTGATCCCTGATGGGGCAACGCATGTCACTACTAGAGTTAAGGGCACTCTTGGCTACTTAGCACCGGAATATGCTATGTTAGGTAAAGCAAATGAGAGTTGTGATGTATACAGTTTCGGGGTTCTTCTTCTAGAACTTGCCAGTGGCAGAAAACCACTTGAGAAACTTAGGAATGCAGTGAAGCGCACCATAAGTGATTGGGCACTGCCATTGGCTTGTGAGAACAAATTCAGGGAAATTGCAGATTCAAGACTTAATGGAGACTACGCGGAGGAAGAACTCAGAAGAGTTGTTTTGATTGCTCTTATATGTGCTCAGAGTCAAGCTGAGAAAAGACCAACCATGCTTGAGGTGGTAGAGCTACTCAAGGGAGACTCAAAAGATAAGATCTCTCAGTTAGAAGCCAATGAGCTCTTTATCAGCTCTTCAACTGTTGGACTTGATCATGAAAGCAGTTCAGAGATCATCTCGGAAGAGAACCAATCAAAACATGAACTGGAACACACCACAGGCACAGGGCTATGA 1092 0.4441 MAFCPMFCCGNVSDRKTRGKKQPPWRVFSLKELHSATNNFNYDNKLGEGGFGSVYWGQLWDGSQIAVKRLKVWSSKADMEFAVEVEILARVRHKNLLSLRGYCAQGQERLIVYDYMPNLSLLSHLHGHHSAECLLDWKRRMIIAIGAAEGIAYLHHQATPHIIHRDIKASNVLLDSDFHAQVADFGFAKLIPDGATHVTTRVKGTLGYLAPEYAMLGKANESCDVYSFGVLLLELASGRKPLEKLRNAVKRTISDWALPLACENKFREIADSRLNGDYAEEELRRVVLIALICAQSQAEKRPTMLEVVELLKGDSKDKISQLEANELFISSSTVGLDHESSSEIISEENQSKHELEHTTGTGL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151262g00005 363 SMART serkin_6 40 311 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151262g00005 363 FunFam PTI1-like tyrosine-protein kinase At3g15890 12 115 - -
Stsc151262g00005 363 SUPERFAMILY Protein kinase-like (PK-like) 21 311 IPR011009 -
Stsc151262g00005 363 Gene3D Phosphorylase Kinase; domain 1 11 115 - -
Stsc151262g00005 363 ProSitePatterns Protein kinases ATP-binding region signature. 46 68 IPR017441 GO:0005524
Stsc151262g00005 363 MobiDBLite consensus disorder prediction 341 355 - -
Stsc151262g00005 363 PANTHER OS01G0253100 PROTEIN 21 318 - -
Stsc151262g00005 363 Gene3D Transferase(Phosphotransferase) domain 1 116 328 - -
Stsc151262g00005 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 162 174 IPR008271 GO:0004672|GO:0006468
Stsc151262g00005 363 ProSiteProfiles Protein kinase domain profile. 40 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151262g00005 363 Coils Coil 363 363 - -
Stsc151262g00005 363 MobiDBLite consensus disorder prediction 339 363 - -
Stsc151262g00005 363 CDD STKc_IRAK 46 313 - -
Stsc151262g00005 363 FunFam PTI1-like tyrosine-protein kinase At3g15890 116 327 - -
Stsc151262g00005 363 Pfam Protein tyrosine and serine/threonine kinase 42 311 IPR001245 GO:0004672|GO:0006468
Stsc151262g00005 363 PIRSF ILK 10 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151262g00005 Stsc-Chr151262 13049 14835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151262g00005 28 317 Trihelix Transcription Factor Family AT1G70460 50.676 1.50e-93 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Stsc151262g00005 PK_Tyr_Ser-Thr 4.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151262g00005 - - gmx:100788153 614.379