Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151261g00005 ATGGCAGCTACATTCACCATCACAACAACACCGCCAGCTACTCTCTCAAATGTTTCAGGAAACAGGATCGGAATCAGAGCTTTGAACCCTAACCCTAACCCTAACGCTATCAGTTGCAGTTCCAGTTGCAGTGCGGTTGCTACTTCATCGAAGCACAGGCTCCTCGGGGGGATTCTTCATCCGCGACTGAATGCGATTCCGCTCGTAAGAACCCCGAGGCAAAGGGGTTTTGTGCGGGCGAGTTCGGAGGATGCTGCACCACTACAGTCCAAAGTAACTCACAAAGTGTTCTTCGATATCAGTATTGGAAACCCTGTTGGGAAGCTTGCTGGGAGGGTTGTGATTGGTCTGTACGGTGACGATGTTCCCCAAACTGCAGAGAATTTCCGTGCCCTCTGCACCGGAGAGAAGGGATTTGGCTATAAGGGCTCCACCTTCCACCGTGTAATCAAGGATTTCATGATTCAAGGAGGAGACTTTGACAAAGGAAATGGGACTGGAGGAAAAAGTATATACGGGCGTACTTTCAAAGATGAGAATTTTAAACTCTCTCATACTGGACCTGGAGTTGTGAGCATGGCAAATGCAGGCCCCAACACAAATGGGAGCCAGTTTTTCATATGCACCGTGAAGACACCATGGCTGGATCAGAGGCATGTTGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAAGCTGGTTGAGTCACAGGAGACAGATCGGGGAGACCGTCCAACAAAGAAGGTTACCATCAGTGACTCTGGTGAGCTTCCAATTGCTTGA 786 0.4898 MAATFTITTTPPATLSNVSGNRIGIRALNPNPNPNAISCSSSCSAVATSSKHRLLGGILHPRLNAIPLVRTPRQRGFVRASSEDAAPLQSKVTHKVFFDISIGNPVGKLAGRVVIGLYGDDVPQTAENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVKLVESQETDRGDRPTKKVTISDSGELPIA 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151261g00005 261 Gene3D - 80 260 IPR029000 -
Stsc151261g00005 261 MobiDBLite consensus disorder prediction 237 261 - -
Stsc151261g00005 261 FunFam Peptidyl-prolyl cis-trans isomerase 81 261 - -
Stsc151261g00005 261 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 110 254 IPR002130 GO:0000413|GO:0003755
Stsc151261g00005 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 217 232 IPR002130 GO:0000413|GO:0003755
Stsc151261g00005 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 146 158 IPR002130 GO:0000413|GO:0003755
Stsc151261g00005 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 204 IPR002130 GO:0000413|GO:0003755
Stsc151261g00005 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 204 216 IPR002130 GO:0000413|GO:0003755
Stsc151261g00005 261 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 117 132 IPR002130 GO:0000413|GO:0003755
Stsc151261g00005 261 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 141 158 IPR020892 GO:0003755|GO:0006457
Stsc151261g00005 261 CDD cyclophilin_ABH_like 94 256 - -
Stsc151261g00005 261 SUPERFAMILY Cyclophilin-like 88 258 IPR029000 -
Stsc151261g00005 261 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 95 258 - -
Stsc151261g00005 261 MobiDBLite consensus disorder prediction 237 251 - -
Stsc151261g00005 261 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 97 257 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151261g00005 Stsc-Chr151261 20241 23483 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151261g00005 66 255 U-box Gene Family AT5G67530 40.314 2.89e-35 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151261g00005 K03768 - zju:107417611 354.755