LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151259g00006	ATGGCTTATAGACGATGCCTCTTGAAAAGAGGGAATCTTGTAGATTGGAAGTGCCACCCGTCCTTCAGTTATGTAATCCACAGCGATGATGGGAAGCGTGAGCGCCCAGAAGAAAAATCATCCTCTGCAGGAATCAGTAGTTTTGTCCAAAAAAGGTCCTTTGGGAGCTCCTTTAATGGATCAATGGGGTTTGGTGCCTCTTCTAGAGTGCTTTCCAACACGCTCCTTTCTCCATGCTCTGGATATAATTTCTGCCGATATATGTCAACGGTTAACAATGGATCAGATAAGATTGAGACTATGACCGACATTGCAGATGTACTTAATGACAAAGTCATTGAAACCATAGCTTCTCAGGCTCCAGTCATTGACGAGGTTGCCATTGCTGCTGCTGATTCGTATTTACCTGTGAAGTTGCTGCAGTATTGGATTGATGCTGTCCATACGTATGCTGGGTTAAACTGGTGGGCAGCAATTGCTCTGACAACCCTTCTGATTCGAACAGCAACAGTTCCGCTATTGGTCTACCAACTTAAGGCTACATCTAAGCTTACAATGTTGAGGCCGCACATGGAACAGATACGGGCTGAGATGGAATATAATGCCTTGGATCCCGTAGCTGCTGCTGAAAGTCAAAAGAAGATGAAGCAGCTGTTTAAGGAATATGGTGTGAGTCCCGTTACACCTTTGATGGGACTCTTTATTCAAGGCCCTATCTTCATTAGCTTTTTTTTTGCGATATCAAACATGGCTGAAAAGGTGCCATCATTCAAGCATGGTGGAATGTACTGGTTTACTGATCTCACAACTCCAGATGCTTTATATGTTCTTCCTATTTTGACTGCATTGTCGTTCTTAATAACAGTTGAGTGTAATATGCAAGAAGGCCTGGAAGGAAATCCTGTGGCTGGTACCATGAAAAATATCTCTAGGGGTCTTGCTGTTCTTACAGTTCCTTTCACCATGGGATTTCCGAAGGCCATATTTTGTTACTGGATTACATCAAATTTGTTCTCACTTGTGTATGGACTTGCGCTTAAAGTTCCTGGCGTAAAGAAAACTTTGGGTATTCCTGAAATAGTAGCTGAAACACCTACCACTGCTCCAGAAGCACAATCTCCGTTTAATGTATTTCCAGCACTTAAAAAGTCCACGTCAGAAGCAACTGAGCCAAGAACATCACCAGCTGAACCATCAAACCATTCAAACAAAAAGATTTCTTCTTCTGCTGTTCTCAGCCAAAGGCTCAAAAGTTTAGAGAAACAAGTGAAAGGAAGAAAGAAAAACCTCAAGAGATGA	1299	0.4249	MAYRRCLLKRGNLVDWKCHPSFSYVIHSDDGKRERPEEKSSSAGISSFVQKRSFGSSFNGSMGFGASSRVLSNTLLSPCSGYNFCRYMSTVNNGSDKIETMTDIADVLNDKVIETIASQAPVIDEVAIAAADSYLPVKLLQYWIDAVHTYAGLNWWAAIALTTLLIRTATVPLLVYQLKATSKLTMLRPHMEQIRAEMEYNALDPVAAAESQKKMKQLFKEYGVSPVTPLMGLFIQGPIFISFFFAISNMAEKVPSFKHGGMYWFTDLTTPDALYVLPILTALSFLITVECNMQEGLEGNPVAGTMKNISRGLAVLTVPFTMGFPKAIFCYWITSNLFSLVYGLALKVPGVKKTLGIPEIVAETPTTAPEAQSPFNVFPALKKSTSEATEPRTSPAEPSNHSNKKISSSAVLSQRLKSLEKQVKGRKKNLKR	432

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151259g00006	432	NCBIfam	membrane protein insertase YidC	154	341	IPR028055	-
	Stsc151259g00006	432	CDD	5TM_Oxa1-like	152	349	-	-
	Stsc151259g00006	432	PANTHER	OXA1	112	417	IPR001708	GO:0016020\|GO:0032977
	Stsc151259g00006	432	MobiDBLite	consensus disorder prediction	382	432	-	-
	Stsc151259g00006	432	MobiDBLite	consensus disorder prediction	382	416	-	-
	Stsc151259g00006	432	Pfam	60Kd inner membrane protein	155	341	IPR028055	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151259g00006	Stsc-Chr151259	35553	42111	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151259g00006	100	353	Chloroplast and Mitochondria Gene Families	AT2G28800	24.907	1.18e-08	55.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151259g00006	K03217		-	gmx:100817052	619.002