Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151250g00013 ATGGCAACTACCAATGAAAAAGATAATAATGAGAAAATGAGTTTGGGTTTGAGTCTCAGCTTAGGATTATATACAGATAATAATGATAATAACAATAAGAATAAGAATGAGCAGCAACAAGCTTTGAAGCTCAATCTCATCCAGAAGCCTCCTTCTCAATCATTTCCAAATCATAGGCTTTCCTTCAACAACTTGTTTCCTTTTCATGATCTGAGCTCTGAGACGAGGTCCTTCCTCCGCGGAATAGACGTCAATTCGGCGGCGACGACATGCGAAGATGACAATGGCGTCTCATCGCCGAACAGCACGGTGTCCAGCATTAGCGGTAAGCAGAGAGAGCCTAATGGAAATGACGAGAACGAAGCTGAGAGGGCGTCATATTCTCGCAGCGACGAAGAAGAAGGCGGTGGAATTGGTGGTGATGCTGATGGGGAGAGTTCGAGAAAGAAGCTGCGGTTGTCGAAGGAACAAGCGGTGGTTCTGGAAGAGACCTTCAAGGAGTACAACACTCTGAACCCGAAACAAAAGCAAGCATTGGCAAAGCAGTTGAATCTGAGGCCCAGACAGGTGGAGGTGTGGTTTCAGAACAGAAGAGCAAGGACCAAGTTGAAGCAAACGGAAGTGGATTGTGAATACTTGAAGAGATGCTGTGAGAATCTAACTGAAGAGAATAGGAGGTTGCAAAAGGAAGTGCAAGAGCTCAGAGCATTGAAGTTATCTCCACAGCTTTACATGCACATGAACCCTCCCACCACCCTTACAATGTGCCCTTCATGTGAGCGTGTAGCCGTCTCATCCACCGGATCCTCCTCCTCGTCGGCCACCATGCAATCCGCCCCTGCTTCGGCTAGTCAAAACCAAATGGGCCCTAACATACAGCGGCCGATTCCCGTCAATCCATGGGGAGCAATGTCGATTCAACGCCGGCCGATTGAGGGCCCGACTACCCGGCCATAA 957 0.4838 MATTNEKDNNEKMSLGLSLSLGLYTDNNDNNNKNKNEQQQALKLNLIQKPPSQSFPNHRLSFNNLFPFHDLSSETRSFLRGIDVNSAATTCEDDNGVSSPNSTVSSISGKQREPNGNDENEAERASYSRSDEEEGGGIGGDADGESSRKKLRLSKEQAVVLEETFKEYNTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELRALKLSPQLYMHMNPPTTLTMCPSCERVAVSSTGSSSSSATMQSAPASASQNQMGPNIQRPIPVNPWGAMSIQRRPIEGPTTRP 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151250g00013 318 Coils Coil 210 240 - -
Stsc151250g00013 318 FunFam Homeobox-leucine zipper protein 18 137 209 - -
Stsc151250g00013 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 15 282 - -
Stsc151250g00013 318 SUPERFAMILY Homeodomain-like 135 205 IPR009057 -
Stsc151250g00013 318 Pfam Homeodomain 148 202 IPR001356 GO:0003677
Stsc151250g00013 318 MobiDBLite consensus disorder prediction 114 136 - -
Stsc151250g00013 318 ProSitePatterns 'Homeobox' domain signature. 179 202 IPR017970 GO:0000981|GO:0006355
Stsc151250g00013 318 Gene3D - 152 202 - -
Stsc151250g00013 318 ProSiteProfiles 'Homeobox' domain profile. 144 204 IPR001356 GO:0003677
Stsc151250g00013 318 SMART halz 204 247 IPR003106 GO:0006355|GO:0043565
Stsc151250g00013 318 CDD homeodomain 148 205 IPR001356 GO:0003677
Stsc151250g00013 318 MobiDBLite consensus disorder prediction 264 293 - -
Stsc151250g00013 318 MobiDBLite consensus disorder prediction 89 150 - -
Stsc151250g00013 318 MobiDBLite consensus disorder prediction 89 113 - -
Stsc151250g00013 318 Pfam HD-ZIP protein N terminus 11 114 IPR006712 GO:0005634
Stsc151250g00013 318 Pfam Homeobox associated leucine zipper 204 238 IPR003106 GO:0006355|GO:0043565
Stsc151250g00013 318 SMART HOX_1 146 208 IPR001356 GO:0003677
Stsc151250g00013 318 MobiDBLite consensus disorder prediction 264 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151250g00013 Stsc-Chr151250 48732 51914 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151250g00013 61 313 Homeobox Transcription Factor Family AT3G60390 62.637 4.47e-98 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Stsc151250g00013 HD-ZIP_N 5.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151250g00013 K09338 - gmx:100798480 372.474