Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151249g00008 ATGCAAAATCACTTGCATTCTTCTTCTTCTTCTTGCACTGCTTTCAGTGCAATTCATGTGAGACATAGTGAACCTGTGCTTGTGGTTCCGGCAAAACCAACCCCAAAAGAAACAAAGCATGTTTCAGACATTGATGACCAAGAGGGTCTTCGCATGCATAACTATGACATTATGTTCTACAAAAGCAACCCTAGAATGAAAGGAAAAGACCCGGCAAAGGTGATAGTGGAGGCCATATCTATGGCACTTGTGCATTACTATCCACTTGCTGGTAGGATTAGAGAAGAAGGGCAAAATAGGAAACTAGTGGTGGATTGTAATGGTGAGGGTGTGTTGTTCGTTGAAGCTGATGCTCATGTTTCTTTGGAAGATTTAGGGGACTCAATTATGCCACCATGCTTGTCCATATGGAAACATGTTTTAATCCACGTGCCTAGATCTCATCTCATTCTTGGTTGCCCTCTTTTGTTCATTCAGTTTCTTGAAATGGTGGCAACAATGGCCAGAGACCCACAAGCACCAGTTATTCAGCACCTACCAGTGTGGCAACGAGAGATCTTCACCGCACGTGACCCACCTCGTGTCACGTGCAACCACCCCACACTCGACATGAACCCTAACGAGGTTGTTTCCGTGTCCTGCTTTATAACCGCTCATGGTAAGATCGGAATACCAAAGGGGTATTATGGCAACGCCTTTTCTTTACCGGCGGCAGTATCGGATGCCGGAACGCTGTGCCGGAAGCCGTTGAGTTATGGCATTGAATTGATTAGAGAAGGGAAGGCAAAAATGAATGAAGAGTATATAAGGTCAATGGTTGACTTTTTGGTGATAAAGGGGCGTCCGATGCACCGTACTACCGGTCAATTCATGGTGGCTGACATGACACGTGTCGGTTTTGATGAGGTTGATTTTGGTTGGGGGAAGGCTATCTTTGGGGGCAGTATGGGTGCAAGACCGTTGGTTAGTTTTCTTTCTTGTTTCAGAAATGGTAAAGGTGAGGATGGGATTGTGGCGCCTGTGTTGTTGCCAAGGCTTGTCATGAAAAGGTTTCTTCTGGAGTTGCTGAAAATCACGGGTGAATATGAAGAGCATAAGTTTCATCATCATCATCTTAATGATAAAATGGAAACAGCTGGAGTTATCAGATCCATGTTGTAG 1161 0.4488 MQNHLHSSSSSCTAFSAIHVRHSEPVLVVPAKPTPKETKHVSDIDDQEGLRMHNYDIMFYKSNPRMKGKDPAKVIVEAISMALVHYYPLAGRIREEGQNRKLVVDCNGEGVLFVEADAHVSLEDLGDSIMPPCLSIWKHVLIHVPRSHLILGCPLLFIQFLEMVATMARDPQAPVIQHLPVWQREIFTARDPPRVTCNHPTLDMNPNEVVSVSCFITAHGKIGIPKGYYGNAFSLPAAVSDAGTLCRKPLSYGIELIREGKAKMNEEYIRSMVDFLVIKGRPMHRTTGQFMVADMTRVGFDEVDFGWGKAIFGGSMGARPLVSFLSCFRNGKGEDGIVAPVLLPRLVMKRFLLELLKITGEYEEHKFHHHHLNDKMETAGVIRSML 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151249g00008 386 PANTHER ACYL TRANSFERASE 4 19 132 - -
Stsc151249g00008 386 Gene3D - 182 353 IPR023213 -
Stsc151249g00008 386 Gene3D - 19 162 IPR023213 -
Stsc151249g00008 386 Pfam Transferase family 225 351 - -
Stsc151249g00008 386 Pfam Transferase family 21 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151249g00008 Stsc-Chr151249 34019 36814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151249g00008 224 317 Monolignol Biosynthesis Gene Families AT5G48930 28.431 2.31e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151249g00008 K19861 - gmx:100817429 348.591