Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151249g00005 ATGTTTTGTAGTGCCCTTGAATTAGGAAACAAGACTGATCATTTGGCATTGCTAAAATTCAAGGAATCAATTACCAATGACCCTTATGGAATCTTCAAGTCTTGGAATAGTTCCACTCACTTTTGCAAGTGGCATGGAATCACATGCATGCAACAACAAAGGGTTATTGAGTTGAACTTATCTGGATGTCACTTGAATGGTGGATCTATATCTCCTCAACTTGGTAATCTCTCTTTTCTAAGATCCATCAACCTTGAAAACAATTCCTTCCATGGAGATATTCCTCCAGAGTTGGGTTGTCTGTCAAGTTTACGGATTCTCCATCTCAACAATAACTCGTTGAGCGGAGAAATCCCCGTAAAATTGACAAGTTGCTCCAAACTCATAGGCCTTGATTTGTCATGGAACAATTTGGTTGGCAAAATTCCAAGTGAAATTGGCTCTCTTTGGAATCTCAAACAGTTTTCCTTTGAGAACAACAGTTTAACAGGACAAATCCCACCATCAATAGGTAATCTTTCATCCCTCACTGATCTTTGGTTGAGCTATAATCACTTGGAGGGAAATATTCCAAAAGAAATTGGCAGGTTGAACAACTTGAAAAATCTTTGTCTAAGTGTCAGCAACTTTTCTGGTCAACTTCCACCTTTTCTCTACAACATGTCATCTCTCAATCAAATTGATGTTCTAAACAATCACTTTAATGGCTCTCTTCCACCAAACATGTTCCACCACCTTCCCAATCTCAAAGCTTTTATAGCTGGAAAGAATCACTTTTCAGGTACTATCCCAACTTCTGTCACAAATGGTTCTTTTCTGCTTCAAGTCCTTGAAATTGGTCAAAACAATTTTGTGGGGCAAGTTCCAAGCCTAGGGAAGCTAAAAATTCTCTCAAAGCTTTCTTTGTTTAACAATAGCCTTGGTTCCAATTCAACTAAGGATTTGGAGTTTCTGAAATCATTGACAAATTGTAGTAACCTGATCGGGCTTAGTATATCTAGCAATAACTTTGGGGGCAAGCTACCAACTTACTTGGGTAATTTGTCCACCCAACTTATCGAACTATACATTGCGAATAACCAAATATATGGAAATATTCCCAATGAAATAGGAAATCTAGTTAACTTAACTATCTTGGCAATGCAACATAACCATTTTGGTGGTACTTTTCCATCAACTTTTGGAAAATTCCAAAACATGGTAGACTTTTGCATCTACCACCATGTCACAAACATGGGAAGCATCATCTGTTTATTGCAATTGTGCACAGAAGAACCAGGTTCTGACTCACCAACTCTGGACAAGGTTTCGTATCGAAAGCTACACCATGGAACTGATGGATTCTCTGTTAGGAACATGATAGGATCAGGAAAATTTGGCACTGTGTATAAGGGCATTCTTGAATCCGATGATGATACACCAGTTGCCATAAAGATTCTTGTTAAAAGAGGGATGCCTCACATTTATAAGCAATCAAGAGGCCCTATCTTTAGTCGATGTGGGACTTGTAATACACCCCCGTCGCGCCTAGCAAGGTTGCTTTCAACCATTGGAGCATCTCAGCTTGAAAGTAGTACAATTGGAATGAAGGGAACTATTGGCTATGCTCCTCCAGAGTATGGAATGGGTTCTAAGGTGTCAATTGATGGTGACATGTATAGTTTTGGAATTCTGGTTTTAGAAATGTTAACCGGAAAAAGACCAACAGATGAAATGTTCAAAGATGGTTGCGATCTTCGTAATCATGTTGAAATGTCACTTCCACATAACATTTTGAATATTGTGGATCCAAATACATACTTGTTATATGAAGCCTATAATTCAGAATTTAAAGATTACAAACATACTAATTTGAAGCTCAAATCACTTACTAATTTGTGA 1881 0.3801 MFCSALELGNKTDHLALLKFKESITNDPYGIFKSWNSSTHFCKWHGITCMQQQRVIELNLSGCHLNGGSISPQLGNLSFLRSINLENNSFHGDIPPELGCLSSLRILHLNNNSLSGEIPVKLTSCSKLIGLDLSWNNLVGKIPSEIGSLWNLKQFSFENNSLTGQIPPSIGNLSSLTDLWLSYNHLEGNIPKEIGRLNNLKNLCLSVSNFSGQLPPFLYNMSSLNQIDVLNNHFNGSLPPNMFHHLPNLKAFIAGKNHFSGTIPTSVTNGSFLLQVLEIGQNNFVGQVPSLGKLKILSKLSLFNNSLGSNSTKDLEFLKSLTNCSNLIGLSISSNNFGGKLPTYLGNLSTQLIELYIANNQIYGNIPNEIGNLVNLTILAMQHNHFGGTFPSTFGKFQNMVDFCIYHHVTNMGSIICLLQLCTEEPGSDSPTLDKVSYRKLHHGTDGFSVRNMIGSGKFGTVYKGILESDDDTPVAIKILVKRGMPHIYKQSRGPIFSRCGTCNTPPSRLARLLSTIGASQLESSTIGMKGTIGYAPPEYGMGSKVSIDGDMYSFGILVLEMLTGKRPTDEMFKDGCDLRNHVEMSLPHNILNIVDPNTYLLYEAYNSEFKDYKHTNLKLKSLTNL 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151249g00005 626 Gene3D Phosphorylase Kinase; domain 1 420 494 - -
Stsc151249g00005 626 SUPERFAMILY L domain-like 12 307 - -
Stsc151249g00005 626 PANTHER RECEPTOR-LIKE PROTEIN 55 510 596 - -
Stsc151249g00005 626 Gene3D Transferase(Phosphotransferase) domain 1 508 622 - -
Stsc151249g00005 626 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 10 172 - -
Stsc151249g00005 626 Gene3D Ribonuclease Inhibitor 12 123 IPR032675 -
Stsc151249g00005 626 Gene3D Ribonuclease Inhibitor 124 195 IPR032675 -
Stsc151249g00005 626 SUPERFAMILY L domain-like 274 407 - -
Stsc151249g00005 626 Pfam Leucine rich repeat N-terminal domain 11 49 IPR013210 -
Stsc151249g00005 626 ProSitePatterns Protein kinases ATP-binding region signature. 454 478 IPR017441 GO:0005524
Stsc151249g00005 626 SMART LRR_typ_2 77 100 IPR003591 -
Stsc151249g00005 626 SMART LRR_typ_2 221 245 IPR003591 -
Stsc151249g00005 626 SMART LRR_typ_2 173 197 IPR003591 -
Stsc151249g00005 626 SMART LRR_typ_2 373 396 IPR003591 -
Stsc151249g00005 626 SMART LRR_typ_2 101 125 IPR003591 -
Stsc151249g00005 626 SMART serkin_6 448 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151249g00005 626 Gene3D Ribonuclease Inhibitor 196 415 IPR032675 -
Stsc151249g00005 626 SUPERFAMILY Protein kinase-like (PK-like) 446 578 IPR011009 -
Stsc151249g00005 626 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 191 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151249g00005 Stsc-Chr151249 18996 21204 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151249g00005 510 596 Receptor kinase-like Gene Family AT3G47570 52.809 2.61e-20 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc151249g00005 LRRNT_2 1.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151249g00005 - - gmx:100786600 440.269