LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc151249g00003	ATGAACGACGTACTCGCTGCACTCGCGCGTGAGGCAGGTTGGGTTGTTGAAGCTGATGGCACCACCTATCGCCAATGCCCTCCACCTTCTCACGTGGGTTCTTTTGCTGCTAGGTCAGTTGAAAGTCAACTCTCGGGTGGTTCTTTGAGACCTTGCTCTGTTAAAGATACACTAGGTAATCAGCCACCGGCGCTTACAATCGATGAATGCTTGTCGCCTGCGTCCATTGATTCTGTGGTAATTGCAGAAAGGGACTTGAAGAATGAGAAATTCTCAAGTGCAAGCCCTGTAAATCCAGTCCACTGCCTCGAGGCCGATCAGCTCATACATGATATTCATTCTGGTGTGCACGAGAATGACTTTACTTGCACGCCATACATTCCGGTTTACTCAAAGCTTCCGGCTGGTATTATTAACAAATTTTGCCAGTTGATTGATCCCGAAAGCATTAGACAGGAGCTAATCCATCTTAAGTCTTTAAATATGGACGGCGTCATTGTGGATTGTTGGTGGGGTATAGTTGAAGGCTGGAGTCCGCAGAAATATGTGTGGTCTGGCTATAGGGATCTTTTTAACCTTATTAGAGAATTTAAGCTTAAGTTACAGGTTGTTATGGCATTTCATGAATGTGGAGGAAATGATTCTAGTGATGCTTTGATTGCCCTGCCACAATGGGTTTTGGATATAGGAAAAGATAACCCGGATATATTCTTTACAGATCGTGAAGGGCGGAGGAATACTGAATGCCTTTCCTGGGGAGTTGACAAAGAGCGTGTTCTGAAAGGAAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTCCGGACAGAGTTTGATGACCTGTTTGCAGAAGGTCTGATTTCTGCAGTAGAAATTGGACTTGGTGCATCTGGGGAGCTGAAATACCCTTCTTTTTCAGAAAGGATGGGATGGAGGTATCCTGGAATAGGCGAGTTTCAGTGCTATGATAAGTACCTGCAACATAGTCTATGCATGGCAGCCAAATTACGTGGTCATTCTTTCTGGGGTAGAGGACCTGATAATGCTGGACACTACAACTCTATGCCACATGAAACTGGATTCTTTTGTGAACGAGGTGATTATGACAATTATTATGGACGCTTCTTCTTGCATTGGTATTCCCAGACATTAATAGACCATGCAGATAATGTTCTGTCCCTTGCTAGCCTTGCTTTTGAGGATACCAAATTAGTTGTCAAGGTTCCTGCTGTATACTGGTGGTATAAGACTCCTAGTCATGCGGCAGAGTTGACGGCGGGATATCACAACCCCACGAATCAGGATGGATACTCTCCTGTCTTTGAGATGTTGAGAAAACATTCCGTCACCATGAAATTTGTCTGCTTAGGATTCCATCTTTCCAGCCTGGAAGCTAATGAATCATTAATTGATCCTGAGGGTTTAAGTTGGCAGGTACTAAACTCAGCCTGGGATAGAGGTTTGGTTGCTGCTGGAGAGAATGCTCTGCTTTGTTATGATAGAGAAGGTTACAAGAGATTAGTTGAGATGGCCAAGCCCAGCAACAATCCAGATAGCCGGCACTTCTCATTCTTTGTCTTCCAACAACCCTCTGTGCTTCAAGGAAATGTTTGCTTGTCAGAATTGGATTTCTTCGTTAAATCCATGCATGGTGAGATGACAGGAGCCATATAA	1680	0.4417	MNDVLAALAREAGWVVEADGTTYRQCPPPSHVGSFAARSVESQLSGGSLRPCSVKDTLGNQPPALTIDECLSPASIDSVVIAERDLKNEKFSSASPVNPVHCLEADQLIHDIHSGVHENDFTCTPYIPVYSKLPAGIINKFCQLIDPESIRQELIHLKSLNMDGVIVDCWWGIVEGWSPQKYVWSGYRDLFNLIREFKLKLQVVMAFHECGGNDSSDALIALPQWVLDIGKDNPDIFFTDREGRRNTECLSWGVDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEIGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLCMAAKLRGHSFWGRGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLASLAFEDTKLVVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEMLRKHSVTMKFVCLGFHLSSLEANESLIDPEGLSWQVLNSAWDRGLVAAGENALLCYDREGYKRLVEMAKPSNNPDSRHFSFFVFQQPSVLQGNVCLSELDFFVKSMHGEMTGAI	559

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc151249g00003	559	SUPERFAMILY	(Trans)glycosidases	121	555	IPR017853	-
	Stsc151249g00003	559	Gene3D	Glycosidases	117	558	-	-
	Stsc151249g00003	559	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	439	462	IPR001554	GO:0000272\|GO:0016161
	Stsc151249g00003	559	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	421	432	IPR001554	GO:0000272\|GO:0016161
	Stsc151249g00003	559	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	370	389	IPR001554	GO:0000272\|GO:0016161
	Stsc151249g00003	559	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	297	319	IPR001554	GO:0000272\|GO:0016161
	Stsc151249g00003	559	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	161	175	IPR001554	GO:0000272\|GO:0016161
	Stsc151249g00003	559	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	182	200	IPR001554	GO:0000272\|GO:0016161
	Stsc151249g00003	559	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	404	420	IPR001554	GO:0000272\|GO:0016161
	Stsc151249g00003	559	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	477	499	IPR001554	GO:0000272\|GO:0016161
	Stsc151249g00003	559	PRINTS	Beta-amylase (glycosyl hydrolase family 14) signature	204	225	IPR001554	GO:0000272\|GO:0016161
	Stsc151249g00003	559	PANTHER	BETA-AMYLASE 1, CHLOROPLASTIC	68	554	IPR001554	GO:0000272\|GO:0016161
	Stsc151249g00003	559	Pfam	BES1/BZR1 plant transcription factor, N-terminal	1	102	IPR008540	-
	Stsc151249g00003	559	Pfam	Glycosyl hydrolase family 14	144	517	IPR001554	GO:0000272\|GO:0016161

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc151249g00003	Stsc-Chr151249	8966	13386	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc151249g00003	1	555	Glycoside Hydrolase	AT5G45300	67.504	0.0	800

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	BES1	Stsc151249g00003		Glyco_hydro_14	4.2e-87	CL0058

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc151249g00003	K01177		-	gmx:100777004	1061.98