Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151249g00001 ATGTTTGAAGGAAGCATTCCTTCAAGCATATCAAACTGCCAGAAGTTACAACATCTTGATTTTTACATGAACAATCTCAATGGAACCATACCATCTGAGATTTTCAGCATTTCTTCCTTAACAACCTTATTAGACTTGTCACAAAACTCATTCAGTGGAAATCTATCTGATGAGTCTCTGAGAATAATCTGGTTGGGAACATTCCTGCCAGCATTGGAGAGAACCATACCATCCTCTCTGGTTTCGCTTAAAGGTCTTCGAGGATTAGACATATCGCGAAACCATTTGTCCGGTTCAATTCCTGAAGGCTTGCAGAACATTTCACTAGAGTATCTTGATATCTCTTTCAACATGTTGGATGGTCAAGTACTGACGGGAGGAGTTTTCGGAAATGCGAGTGAGTTTGCAATGATTGGAAACAATAAGCTTTGTGGGGGTGTTTCAGAGCTTCATTTGCCACCATGCCCTTCTAAGAGACACCACAATTTCAGGTTGATTATAGTGATAGTTTGTGTGTGTGTTTTTTTCTTCATCTTATCACTTTTCCTAACCATTTATTGGATGAGGAAGAGAAACAAGAAAATATCTTCAGATTCTTCACCAACAATTAACCAGCTTGTTAAGGTTTCATATCAAAGCCTACACAATGGAACAAATGGATTCTCAGAAGAAAATCTGATAGGGTGTGGAATTTTTGGATCTGTATACAAGGGAACTCTTGAGTTAGAAGGAAGTGGTGTTGTTGTTGCCATAAAGGTCCTAAAGCTTCAACAGAAAGGTGCTGAAAAGAGTTTTGTAGCTGAATGTAATGCACTCAGGAATGTCAGGCATAGAAATCTGGTGAAGATTTTAACATGTTGCTCAGGTACAGATTATAAAGGGCAAGAATTCAAGGCTTTGGTTTTTGAGTTCATGACAAATGGAAGCCTAGAAAGTTGGTTACATCCACCATCAACAGGAATTCCAAATCACACTCTGAACCTTGAGCAAAGGTTAAACATCATCAACGATGTGGCCTCAGCATTTCATTATCTTCACTATGAATGTGATCCAACTATTATCCAGTGTGATTTAAATCCAAGCAATGTTCTTCTGGATGATTTCATGGTAGCTCATGTAGCTGATTTTGGCTTAGCAAGACTAGTTCGGAATAATATTGGTGAGTGTTCTATGCAAACAAGCTCAATTGGACTTAAAGGAACCTTTGGTTATGCTCCTCCAGAGTATGGAATGAGTTATCAAGTGTGTATGGAAGGAGATATGTATAGCTTTGGAATTGTGATATTAGAAATGCTGACCGGAAAGAGGCCCACGGATGAGATGTTCAAGGATGGTCACAATCTTCATAATTATGTTGAAGCTTCAATTTCAAGTAACATATTGCAGATTGTGGACCCTCGTATCCTTTGCAGGAAAAAGCAAGTGCACCCTAGTGTTGATGATTGTTTGATTTCACTGCTTAGGATTGGACTTGCTTGTTCAGTGGAATCACCAAATGAAAGAATGAATATGGTTGATGTCATGAGAGAGCTTAATCGAATCAGAAGTTGTTTTCCTTCTGCTGAACTCAAGGAAGAAGCAGATTAG 1587 0.3875 MFEGSIPSSISNCQKLQHLDFYMNNLNGTIPSEIFSISSLTTLLDLSQNSFSGNLSDESLRIIWLGTFLPALERTIPSSLVSLKGLRGLDISRNHLSGSIPEGLQNISLEYLDISFNMLDGQVLTGGVFGNASEFAMIGNNKLCGGVSELHLPPCPSKRHHNFRLIIVIVCVCVFFFILSLFLTIYWMRKRNKKISSDSSPTINQLVKVSYQSLHNGTNGFSEENLIGCGIFGSVYKGTLELEGSGVVVAIKVLKLQQKGAEKSFVAECNALRNVRHRNLVKILTCCSGTDYKGQEFKALVFEFMTNGSLESWLHPPSTGIPNHTLNLEQRLNIINDVASAFHYLHYECDPTIIQCDLNPSNVLLDDFMVAHVADFGLARLVRNNIGECSMQTSSIGLKGTFGYAPPEYGMSYQVCMEGDMYSFGIVILEMLTGKRPTDEMFKDGHNLHNYVEASISSNILQIVDPRILCRKKQVHPSVDDCLISLLRIGLACSVESPNERMNMVDVMRELNRIRSCFPSAELKEEAD 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151249g00001 528 ProSiteProfiles Protein kinase domain profile. 221 518 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151249g00001 528 Gene3D Transferase(Phosphotransferase) domain 1 305 525 - -
Stsc151249g00001 528 FunFam LRR receptor-like serine/threonine-protein kinase EFR 192 304 - -
Stsc151249g00001 528 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 305 524 - -
Stsc151249g00001 528 PANTHER OS04G0122200 PROTEIN 2 515 - -
Stsc151249g00001 528 ProSitePatterns Protein kinases ATP-binding region signature. 227 252 IPR017441 GO:0005524
Stsc151249g00001 528 SUPERFAMILY Protein kinase-like (PK-like) 200 511 IPR011009 -
Stsc151249g00001 528 Pfam Protein tyrosine and serine/threonine kinase 224 452 IPR001245 GO:0004672|GO:0006468
Stsc151249g00001 528 Gene3D Phosphorylase Kinase; domain 1 183 304 - -
Stsc151249g00001 528 Gene3D Ribonuclease Inhibitor 1 164 IPR032675 -
Stsc151249g00001 528 SUPERFAMILY L domain-like 3 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151249g00001 Stsc-Chr151249 5095 6876 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151249g00001 2 521 Receptor kinase-like Gene Family AT3G47570 44.760 8.96e-138 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Stsc151249g00001 PK_Tyr_Ser-Thr 1.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151249g00001 - - gmx:100782685 622.854