Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151247g00016 ATGGGAATTCCTCCTCCAGCATCTGATTCTCCAATGCCAATGAATTCTCCTTGTCTCAGTTCATCTTCCGTGCCTTATGTTAATCCAGCCAGCAATTCCTTCAATTTGGCTAGTTCAGTTCCAGCACCAAAGTTTGCTTTGGAATCTTTTAGCTTCAAACAGTTCTACAGAGTTGTACATGAGCCAGATGGCAAGGAAAATGAAACATGTGTTAATAGCACATTTCAAGATGCGGGACTGTCTAAAGCTAATTCAATTTTACTGGAAGATGCAATAGCCCAAACTGATCCATCAGGATCTCCATGTCAAGCATGCATTCCAGATTCCGGCTGGAAGCCCCGTGGGGTGTTGGTTGCACACCTCCAGGAGCACAGTTCAGCTGTAAATGAAATAGCTATTTCCACTGATCATAGCTTATTTGTGAGTGCGTCTGATGACTCTACAGTCAAAATCTGGGATTCAAGAAAACTGGAAAAGGACATTGCTTTCAAGTCAAAGCTAACTTATCACCTGGGGGGAAGCCGAGCATTATGTGCAACAATGCTTCGGGGTTCTACACAAGTAATTGTTGGAGCATCTGATGGACTGATTCATATGTTTTCTATTGATCATATATCTAAAGGTTTGGGAAATGTTGTTGAGAAGTATTCTGGTATTGCGGATATCACTAGAAAGGATATCAAGGAAGCTGCTATTCTCAGCCTTTTGAAGAGCCCAGTGGATAATCATGCAGTCATGTATAGCACACAGAACGGTGGTATTCATATGTGGGATACTAGGTCAGATTCCAATGTATGGACTCTAAAAGCTGTTCCAGAGGAGGGCTATGTTTCATCTGTAGCCACAGGGCCCTGTGGCAATTGGGTTGTATCAGGGTCATCAAGGGGCGTTCTTACACTTTGGGATCTCAGGTTTCTTATTCCTGTGAACTCTTGGCAGTATTCTCCTGCTTGCCCTATAGAAAAGATTTCTCTCTTTCTTCCTCCTCCAAATGGCCCTCTTTCTTCGACTTTTAGGCCTCTTGTTTATGTTGCTGCTGGTTGCAATGAAGTTTCTCTTTGGAATGCGGAGAATGGCAGCTGTCACCAGGTATTGAGGTTGGCCAATTATGATAATGATGCAGAAATGTCTGATCGCCCTTGGGCACTGGGCAGACATTCAAGTAAACTAAGTTCTAAATCAAATCATAATAGAAATGTCAATCCCAAGTACAATGTTGATGAACTAAATGAACCTCCTCCTCGTCCTCCTGGTATCCGCTCCCTACTTCCTTTGCCAGGGGGTGATTTATTGACTGGGAGCACTGATTTGAAGATACGCCGATGGGATCATTGCAGTCCGAAAAGAAGTTATTGTATTTGTGGCCCAAACTTAAAAGGAGTTGGAAATGATGATTTTTATGAGACAAAATCTAGTTTTGGAGTGCAAGTTGTACAGGAGACAAAAAAACGGCCACTTACAATAAAGATAACTGCAAAGGCAGTTCTTGCTGCTGCTGCCACTGATCCTGCGGGTTGCCATCGTGATTCTATTCTTTCTCTGGCTTCTATTAAGTTAAACCAGAGACTCTTGTTATCAAGTGGTAGAGATGGGGGTATCAAGGTTTGGAAGTAA 1614 0.4275 MGIPPPASDSPMPMNSPCLSSSSVPYVNPASNSFNLASSVPAPKFALESFSFKQFYRVVHEPDGKENETCVNSTFQDAGLSKANSILLEDAIAQTDPSGSPCQACIPDSGWKPRGVLVAHLQEHSSAVNEIAISTDHSLFVSASDDSTVKIWDSRKLEKDIAFKSKLTYHLGGSRALCATMLRGSTQVIVGASDGLIHMFSIDHISKGLGNVVEKYSGIADITRKDIKEAAILSLLKSPVDNHAVMYSTQNGGIHMWDTRSDSNVWTLKAVPEEGYVSSVATGPCGNWVVSGSSRGVLTLWDLRFLIPVNSWQYSPACPIEKISLFLPPPNGPLSSTFRPLVYVAAGCNEVSLWNAENGSCHQVLRLANYDNDAEMSDRPWALGRHSSKLSSKSNHNRNVNPKYNVDELNEPPPRPPGIRSLLPLPGGDLLTGSTDLKIRRWDHCSPKRSYCICGPNLKGVGNDDFYETKSSFGVQVVQETKKRPLTIKITAKAVLAAAATDPAGCHRDSILSLASIKLNQRLLLSSGRDGGIKVWK 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151247g00016 537 Gene3D - 108 217 IPR015943 GO:0005515
Stsc151247g00016 537 Pfam WD domain, G-beta repeat 117 153 IPR001680 GO:0005515
Stsc151247g00016 537 FunFam Phosphoinositide 3-kinase regulatory subunit 4 102 162 - -
Stsc151247g00016 537 SMART WD40_4 261 302 IPR001680 GO:0005515
Stsc151247g00016 537 SMART WD40_4 114 153 IPR001680 GO:0005515
Stsc151247g00016 537 SMART WD40_4 489 537 IPR001680 GO:0005515
Stsc151247g00016 537 SMART WD40_4 386 443 IPR001680 GO:0005515
Stsc151247g00016 537 SMART WD40_4 164 201 IPR001680 GO:0005515
Stsc151247g00016 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 520 537 IPR001680 GO:0005515
Stsc151247g00016 537 Gene3D - 226 537 IPR015943 GO:0005515
Stsc151247g00016 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 121 153 - -
Stsc151247g00016 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 304 IPR001680 GO:0005515
Stsc151247g00016 537 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 153 IPR001680 GO:0005515
Stsc151247g00016 537 MobiDBLite consensus disorder prediction 387 404 - -
Stsc151247g00016 537 MobiDBLite consensus disorder prediction 385 425 - -
Stsc151247g00016 537 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 504 537 - -
Stsc151247g00016 537 PANTHER PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 7 537 IPR045162 GO:0004674|GO:0016236|GO:0045324
Stsc151247g00016 537 PRINTS G protein beta WD-40 repeat signature 430 444 IPR020472 -
Stsc151247g00016 537 PRINTS G protein beta WD-40 repeat signature 140 154 IPR020472 -
Stsc151247g00016 537 PRINTS G protein beta WD-40 repeat signature 524 537 IPR020472 -
Stsc151247g00016 537 SUPERFAMILY WD40 repeat-like 115 537 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151247g00016 Stsc-Chr151247 63760 66219 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151247g00016 112 321 U-box Gene Family AT1G04510 23.810 7.16e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151247g00016 K08333 - gmx:100796837 840.491