Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151246g00005 ATGATGGCTCCTCCTTCTCCATACAGTTTTCAGATTATTATGCTTCTTTCTCTAACAACTTTGTTGCACATAGCATCTCATCATCACATTCAAGCTGCTGGTTCAAAAGTGGAATACCTTCCTGGTTTTGATGGTCCCCTCCCCTTTCAACTTGAAACTGGGTACGTTGGATTGGGGGACACAGATGATGACTTGCAAGTTTTTTACTATTTTGTTGAGTCAGAAAATGATCCTAAAAATGACCCTCTTATACTATGGCTAACTGGTGGTCCTGGTTGTTCTTCATTCTCTGGTCTTGCATACCAAATTGGTCCTATAAAGTTTAAAATTGAGGAATACAATGGGAGCAGCTTACCTAATTTGCTCTTGAGGCCACAGTCATGGACAAAGGTGTCTAACATTATTTTTGTAGATTTGCCATTTGGAACTGGCTTCTCATATGCAAAAGATGTAATTTCCCATCGAAGTGATTGGAAACTTGTTCATCATACTCATCAATTTATTAGGAAGTGGTTTATTGAACATCCGGAATTTCTTTCAAATAAATTTTATATGGGAGCTGATTCATACTCTGGAATTCCTGCTCCGGCTATTGTTCACGAAATTTCAAATGGAAATGATAAAGGTCTCCACCCCTGGATAAATCTCCAGGGATATCTATTAGGAAATCCGACTACCACAAAAAAAGAGCCAAATGATCGGATACCGTATGTTCATGGAATGGCACTTATTTCTGATGAACTTTTTTTGTCGCTGCAGAGAAACTGTAAAGGAGAGTATATGAACATAGATTCCCAAAATCATTTGTGTTTAAGAGACATGCAGTATTTTCAAGAGTGTCTTTCAAGAATTAATACGTTCGACATTTTGGATATCTATTGTGAAGACAACTCTCTTAAGAACAATGAAGCAAAGCAGAGAGTATTTTTGTCTGAAATAGTTGAGGCCTCTCGTAGTTCTTATCTATCAGTGCCTGCAATGGACTGCCAAATTTATGGTTTCTTCCTCGGCACTCAATGGGCCAATGATGCAAGTGTCCGCAAGGCACTGCATATTAGAGAGGAAATCGGAAAATGGGAACGTTGTTACACTACTGATTTTGATTATGACATTGCTAGTAGTTTCGAATTTCATGTAAATCTTAGCGCGAAAGGCTACCGTTCTTTGATATACAGCGGCGATCATGACGCAGTTGTTCCTTTCTCGTCGACGCAGGCGTGGATAAGGGCTCTAAACTACTCCATTGTAGATGATTGGAGGCCATGGTTTTTAAATGGCCAAGTTGCAGGATACACAAGGACTTATGCGAATCAAATGACATTTGCAACAGTGAAAGGTGCAGGGCATACAGCTCCTGAGTACAAACCTGATGAAGGTTTAGCCATGTTCTCAAGCACCACCATCACCACAGCAACAACAACAACCACCTCACCACCACCATTGCCACAATCGCAGCACTACCACCACCGCCAGAAGAAGAAGAAGCCGCAAACCTTTGAATACTGGATCTGTAATAGAACCTTGGGCGGTGACATCACAGTGAAGAGGGGGCGACGCGACGGAGAAGGAGGGCGGTGGTGCGGGGAGCGGCCTAGCTTCCTAACACGGGCAGCGGCAGATTCAGGGGAATTGGAGTTCCTGCTACAACGATGGAACCTCTTAAACACTGGAACTAGGGCTGGAAGTGAGTCAAGCCAGCTCATGAGCGAGCTCGAGCTTGACTCGGTAGCGACTCGATAA 1740 0.4276 MMAPPSPYSFQIIMLLSLTTLLHIASHHHIQAAGSKVEYLPGFDGPLPFQLETGYVGLGDTDDDLQVFYYFVESENDPKNDPLILWLTGGPGCSSFSGLAYQIGPIKFKIEEYNGSSLPNLLLRPQSWTKVSNIIFVDLPFGTGFSYAKDVISHRSDWKLVHHTHQFIRKWFIEHPEFLSNKFYMGADSYSGIPAPAIVHEISNGNDKGLHPWINLQGYLLGNPTTTKKEPNDRIPYVHGMALISDELFLSLQRNCKGEYMNIDSQNHLCLRDMQYFQECLSRINTFDILDIYCEDNSLKNNEAKQRVFLSEIVEASRSSYLSVPAMDCQIYGFFLGTQWANDASVRKALHIREEIGKWERCYTTDFDYDIASSFEFHVNLSAKGYRSLIYSGDHDAVVPFSSTQAWIRALNYSIVDDWRPWFLNGQVAGYTRTYANQMTFATVKGAGHTAPEYKPDEGLAMFSSTTITTATTTTTSPPPLPQSQHYHHRQKKKKPQTFEYWICNRTLGGDITVKRGRRDGEGGRWCGERPSFLTRAAADSGELEFLLQRWNLLNTGTRAGSESSQLMSELELDSVATR 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151246g00005 579 SUPERFAMILY alpha/beta-Hydrolases 37 465 IPR029058 -
Stsc151246g00005 579 FunFam Carboxypeptidase 375 468 - -
Stsc151246g00005 579 Pfam Serine carboxypeptidase 41 466 IPR001563 GO:0004185|GO:0006508
Stsc151246g00005 579 FunFam Serine carboxypeptidase-like 11 31 470 - -
Stsc151246g00005 579 Gene3D alpha/beta hydrolase 31 470 IPR029058 -
Stsc151246g00005 579 PRINTS Carboxypeptidase C serine protease (S10) family signature 124 136 IPR001563 GO:0004185|GO:0006508
Stsc151246g00005 579 PRINTS Carboxypeptidase C serine protease (S10) family signature 137 147 IPR001563 GO:0004185|GO:0006508
Stsc151246g00005 579 PRINTS Carboxypeptidase C serine protease (S10) family signature 171 196 IPR001563 GO:0004185|GO:0006508
Stsc151246g00005 579 PRINTS Carboxypeptidase C serine protease (S10) family signature 439 452 IPR001563 GO:0004185|GO:0006508
Stsc151246g00005 579 MobiDBLite consensus disorder prediction 472 493 - -
Stsc151246g00005 579 FunFam Carboxypeptidase 328 471 - -
Stsc151246g00005 579 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 35 456 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151246g00005 Stsc-Chr151246 57386 62823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151246g00005 28 59 Calmodulin-binding Proteins AT2G22960 62.500 3.67e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151246g00005 K16296 - gmx:100780069 725.317