Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151246g00001 ATGATGTTGAATCGCGGGTCAAATGTTTCGGCTGAAGGGGGTGGAGATGAGCTGTATACGCAGCTATGGAAGGGGTGTGCGGGACCACTGGTGGACGTTCCCCGTGTTGGGGAGAGGGTCTTCTACTTCCCTCAGGGGCACATGGAACAATTGGAGGCATCTACGAATCAGGAGCTAAATCAAAGGATTCCTTTGTTCAAACTTCCCTCGAAGATCCTTTGTCGCGTCGTGAACATTCAGTTACTGGCTGAACAAGAAACGGATGAGGTTTATGCACAGATTACTTTGGTGCCGGAGTCTAATCAAGATGATGAGCCTACGAGCCCCGATCCGTCCCCTGCTGAACCAACAAGGCCGACTGTTCACTCCTTCTCGAAGGTCTTGACTGCTTCGGACACGAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACAGAGTGCCTTCCTCCTTTGGACATGTCTCAACCAACTCCGACTCAGGAATTGGTTGCGAAGGATCTTCATGGTTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAACCACGCAGACACTTGCTCACAACTGGGTGGAGTACTTTTGTGACTTCCAAAAGATTGGTTGCTGGAGACACCTTTGTATTTTTGAGGGGGCAAAATGGGGAATTGCGTGTAGGAGTTCGCCGTCTTGCTCGTCAGCAGAGTAACATGCCGTCATCTGTAATTTCCAGCCAGAGCATGCACCTCGGTGTGCTTGCAACTGCCTCTCATGCTGTTGCTACTCAGACTCTTTTCGTAGTTTATTACAAGCCACGCACGAGCCAGTTCATCATCGGCCTCAACAAGTATTTGGATGCAGTCAACAACAAGTTTAGTGTTCAATGGGATGAACCTGCAGCTGTTCCAAGACCCGATAGAGTTTCACCATGGGAGATAGAACCCTATGTGGCTCCTGCTCTTGCATCCTCAGTTCAACCTACTGTTGTAAAGGCCAAAAGGCCTCGACCACCCAGTGAACATCCCGATCTTGACACCCAATCGGCTGCCTCGGTTTTCTGGGATTCCGGTCTAACACAGGCTGATATGACACAGCATAGTGTGATGGCTGAAAGTAAAAGGAGTGATAGTACCAGCATGTGGCATCATCATAAGCAAATCGATATGAATAGTAAGAGCAACAACAATCTGATATCAAGGAATCAGACAGAAGGAAGTTGGCTGTCTTCCCCCAATTCTTGTTGTCCTTCGCAATTATTTCAGGACACAGTGGATGACAGCAAGAGTGTCTCAGCTTGGCCTGCTTCGAATCCACACTCATCTAGATTGAACAATGATCTTGTGCATGATCAGGTTGACAAGGAAAACAAAGCCGAGGCTGCTACCAGTTGTCGACTTTTTGGAATTGACCTTATTGATCATTCCCGGAACTCATCTACTGTAGAGAAGGCAGCTGCACATGCGGTAAACGTTCACAGTTTCACCTCTGAAGGTTGTGTTAGTACAGTTTCTAAAACTGAGGCAGGTCAGAAGTCTGATGCCTCGAAGACCGGTAAGGAGAGGAAACAAGAGCAGCAGCAAGTATCACCAAAAGAGACTCAGAGCAAGCAGATCTGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGTGTTGCAGTAGGACGTGCCGTGGATCTTACTATGTTGGATGGCTATGAACATCTTATTGTTGAATTGGAGGAGTTGTTCGACATAAAGGGGCAGCTTCAAGACAGGAATAATGAATTCTGCAACATGGTTAGGAGAATTTTCATCTGTTCCAGCCAAGATGTGAAGAAGATGAGCACAGGAAGCAAACTACCAATCTCTTCAATGGAAGAAGGCACTGTAATAAGTTCAGAAACAGCTGAAACATGA 1878 0.4723 MMLNRGSNVSAEGGGDELYTQLWKGCAGPLVDVPRVGERVFYFPQGHMEQLEASTNQELNQRIPLFKLPSKILCRVVNIQLLAEQETDEVYAQITLVPESNQDDEPTSPDPSPAEPTRPTVHSFSKVLTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGQNGELRVGVRRLARQQSNMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGLNKYLDAVNNKFSVQWDEPAAVPRPDRVSPWEIEPYVAPALASSVQPTVVKAKRPRPPSEHPDLDTQSAASVFWDSGLTQADMTQHSVMAESKRSDSTSMWHHHKQIDMNSKSNNNLISRNQTEGSWLSSPNSCCPSQLFQDTVDDSKSVSAWPASNPHSSRLNNDLVHDQVDKENKAEAATSCRLFGIDLIDHSRNSSTVEKAAAHAVNVHSFTSEGCVSTVSKTEAGQKSDASKTGKERKQEQQQVSPKETQSKQICSRSRTKVQMQGVAVGRAVDLTMLDGYEHLIVELEELFDIKGQLQDRNNEFCNMVRRIFICSSQDVKKMSTGSKLPISSMEEGTVISSETAET 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151246g00001 625 Gene3D - 121 225 IPR015300 -
Stsc151246g00001 625 MobiDBLite consensus disorder prediction 506 521 - -
Stsc151246g00001 625 FunFam Auxin response factor 122 226 - -
Stsc151246g00001 625 Pfam AUX/IAA family 397 571 IPR033389 -
Stsc151246g00001 625 ProSiteProfiles B3 DNA-binding domain profile. 124 226 IPR003340 GO:0003677
Stsc151246g00001 625 Gene3D - 283 314 - -
Stsc151246g00001 625 MobiDBLite consensus disorder prediction 499 535 - -
Stsc151246g00001 625 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 288 IPR044835 GO:0003677|GO:0006355|GO:0009725
Stsc151246g00001 625 Pfam Auxin response factor 250 288 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Stsc151246g00001 625 CDD B3_DNA 122 224 IPR003340 GO:0003677
Stsc151246g00001 625 Gene3D - 531 582 - -
Stsc151246g00001 625 MobiDBLite consensus disorder prediction 98 121 - -
Stsc151246g00001 625 SMART B3_2 124 226 IPR003340 GO:0003677
Stsc151246g00001 625 MobiDBLite consensus disorder prediction 384 404 - -
Stsc151246g00001 625 SUPERFAMILY DNA-binding pseudobarrel domain 115 253 IPR015300 -
Stsc151246g00001 625 Pfam B3 DNA binding domain 124 224 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151246g00001 Stsc-Chr151246 30500 35452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151246g00001 11 607 B3 DNA Binding Superfamily AT4G23980 52.640 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Stsc151246g00001 AUX_IAA 3.9e-06 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151246g00001 K14486 - gmx:100779003 973.385