Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151245g00003 ATGCCCTCCCGCAAGCTCCTCCAACCGCCGCCTTCCACCGTGGACTTCCAGAAACCAACACCCAACTTCCCTCACCGCCGCCACCACCACCACCACAGTCTCCTTCCCCTTCTCATCACCGCCGCCGCCGCCTCCATCCTTTTCCTCGTTCTCTTCCTTCTATTCCTCCGCCGTCGCAAGCGCACCGCCCCTTCCACCACCTCCACCGCCGGCGATGACTCCAAGCCCCCACACCGCTTCTCCTACTCCCTCATTCGGCGCGCCACCAACTCCTTCTCCTCCCCACTCGGCCATGGCGGGTTCGGCACCGTCTTCTCCGGCACCCTTCCTCCTCCGGCGAGAACTCCCGTCGCAGTGAAGCTCATGGACCCCACAACAACAAGCTCCCAGCAAGGCGAGCGGGAGTTCCACAACGAGCTCTTCTTCGCCTCCGTGCTCTGCCAATCCCCTCACGTCGTGGCCGCCATGGGATTCTCATCGGACCCAAAACGGCGCCGTTTCCTGCTCGTGTACGACCTCATGGTGAACGGAAACCTCCAAGACGCTCTATTGCACAGAAAGTGCCCTGAACTCATGCAGTGGAACAAGCGCTTCTCTGTTGCATTGGACATAGCAAAAGGTGTTCTTTTCCTTCATAGTTGTAACCCTCCTGTCATTCATAGTGATCTTAAGCCTAGTAATATTCTCCTTGATGCTGAATTCAATGCCAGAATTGGGGATTTTGGACTTGCCCGTTTGAAATCGGATCCCAATTTGGATGTTTTGGATGGTGGTGCTGATTTTGAGGAGAAAAAGGAGGGGTTTTTGGAGTGTGATGGTGGTGCTGTTGTTGTTGCGGTTGATGATTGTGAAACTGAGAGTGTTAACACTGCTTGTTACTTTGAGGAGGGTAGTCTGGGTGTGGATCATTCTCCTGAGTGTTTTGTTAGGGTGCCTAACTTGGAGACTTCGCCGGAGACTAATGGGGCTGGCGTGTCGGCCTCACCGGAGATGGCGGTGGCATTGGCTGGGGCGGCGTCTTTGTCACCGGGGTTTGACAAGGCTAGTAGTGTTCAGAGTGAGAAGGGTGTTAAGAAGAATGGGAAAGGGATGAGGAGTAATTCAGTGAGGGATTGGTGGTGGAAGCAGGATAATGATGAGGTTGCAGCCTCATCAAATCCTGTTGGGGAGAGTAAGTCGGTTAAGGATTATGTGATGGAGTGGATTGGGAAGGATGTTGATAAGGAAAGGCAAAAGGGGGAATGGCTTGGGGGAGAAGGTGGGCAATTGTGGAAGCAAGAGAAGAAGAGAATGAAGAAGAAGAAAAAGAAGAGTAGGAAGCACCAATTGGAATGGTGGGAATCAATGGAGGAGGAGAAGTTTGATGATGTTTTGAAGAAGGAGAAGAGGAGGCCAGCAAGGAGGTGGTGGAAGGAGGAGTATGGCGAAGAGCTCGAAAAGAAGAAGAAGAAGAAAAAGAGGAAGGGGTTGAGTAACGATGATGATGATGATGATGGTAATGGTAATGGGAGTGAGTGGTGGATGAGCGACGATGCTCTGTACAGAGACCGGAATGCGAAGAAGGCCAAGAGTAAGAGCAGGAATAACCGTGGAGGCGCAGATTGGTGGTTGGAGGGGCTAAGTGGCGACTTATGGAGAACTCGCCGGAACAGCTTCGATTCGGCTAGTGGAGAAATTCCAAAGAGTGGTGGTGTGAGTAGCACTCCAAGTATGAGGGGAACCGTTTGTTATGTTGCTCCGGAGTATGGCTACAGCGGAGATGTCTCCGAAAAGTGTGATGTATATAGTTTTGGTGTCTTGTTGCTAGTTATCATTTCAGGGAGGCGGCCGCTTCAGGTGAACGGTTCGCCAATGTCTGAGTTTCACCGTGCAAATCTTTTATCTTGGGCGCGACATTGCGCTAGAAATGGGAAGCTCATTGAGCTGGTTGATCAGTCTATTCAGTCATTAGAAAAGGATCAGGCTCTTGTATGTATCAAGGTGGCTTTGCTTTGTGTGCTCAAGTCCCCTGCTCGCCGCCCTTCGATGAAAGAGGTTGTCGGAATGCTCACCGGGGAGTTGGAGCCACCCCAATTGCCCGTTGAGTACTCGCCTTCAACCCCTTCTCGATTCCCATTCAAGACCCGGAAGAAAGGCCGGTGA 2142 0.5224 MPSRKLLQPPPSTVDFQKPTPNFPHRRHHHHHSLLPLLITAAAASILFLVLFLLFLRRRKRTAPSTTSTAGDDSKPPHRFSYSLIRRATNSFSSPLGHGGFGTVFSGTLPPPARTPVAVKLMDPTTTSSQQGEREFHNELFFASVLCQSPHVVAAMGFSSDPKRRRFLLVYDLMVNGNLQDALLHRKCPELMQWNKRFSVALDIAKGVLFLHSCNPPVIHSDLKPSNILLDAEFNARIGDFGLARLKSDPNLDVLDGGADFEEKKEGFLECDGGAVVVAVDDCETESVNTACYFEEGSLGVDHSPECFVRVPNLETSPETNGAGVSASPEMAVALAGAASLSPGFDKASSVQSEKGVKKNGKGMRSNSVRDWWWKQDNDEVAASSNPVGESKSVKDYVMEWIGKDVDKERQKGEWLGGEGGQLWKQEKKRMKKKKKKSRKHQLEWWESMEEEKFDDVLKKEKRRPARRWWKEEYGEELEKKKKKKKRKGLSNDDDDDDGNGNGSEWWMSDDALYRDRNAKKAKSKSRNNRGGADWWLEGLSGDLWRTRRNSFDSASGEIPKSGGVSSTPSMRGTVCYVAPEYGYSGDVSEKCDVYSFGVLLLVIISGRRPLQVNGSPMSEFHRANLLSWARHCARNGKLIELVDQSIQSLEKDQALVCIKVALLCVLKSPARRPSMKEVVGMLTGELEPPQLPVEYSPSTPSRFPFKTRKKGR 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151245g00003 713 MobiDBLite consensus disorder prediction 481 503 - -
Stsc151245g00003 713 PANTHER OS07G0586332 PROTEIN 1 712 IPR044576 -
Stsc151245g00003 713 Gene3D Transferase(Phosphotransferase) domain 1 549 690 - -
Stsc151245g00003 713 SUPERFAMILY Protein kinase-like (PK-like) 74 703 IPR011009 -
Stsc151245g00003 713 MobiDBLite consensus disorder prediction 1 28 - -
Stsc151245g00003 713 Gene3D Transferase(Phosphotransferase) domain 1 80 259 - -
Stsc151245g00003 713 ProSiteProfiles Protein kinase domain profile. 90 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151245g00003 713 MobiDBLite consensus disorder prediction 691 713 - -
Stsc151245g00003 713 ProSitePatterns Protein kinases ATP-binding region signature. 96 120 IPR017441 GO:0005524
Stsc151245g00003 713 SMART serkin_6 90 683 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151245g00003 713 MobiDBLite consensus disorder prediction 345 365 - -
Stsc151245g00003 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Stsc151245g00003 713 MobiDBLite consensus disorder prediction 412 442 - -
Stsc151245g00003 713 Pfam Protein tyrosine and serine/threonine kinase 569 682 IPR001245 GO:0004672|GO:0006468
Stsc151245g00003 713 Pfam Protein tyrosine and serine/threonine kinase 93 248 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151245g00003 Stsc-Chr151245 25545 27686 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151245g00003 561 684 Receptor kinase-like Gene Family AT3G58690 34.127 5.68e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Stsc151245g00003 PK_Tyr_Ser-Thr 2.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151245g00003 - - lja:Lj2g3v0473820.1 819.69