Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151245g00002 ATGTTTCCTTTACAACGAGGCAATGAGCTGGTGATTCAGTTTTCTAATAGTCCCCACCAACACAAAATCTCCCAAGATCTGATCCTTCAAGATTATGCTTCTCTTGATGTCAATGATTCTGATAAAATAATTTTCACAAAAAGCCAATCTTCAAAGAAGCTATTTTATGATGGTGCTGCTGCTGAGGAAGATAACAACAACAAAGATGATTCTAACAACGATGATGATCATAAGAAGAAGAAGATTGTTCATAGAGAGATTGAGAGGCTAAGGAGGAAAGAAATGGCTACCCTTTATTCCTCTCTTAGATCCCTTCTCCCTCTTCAGTTCATCAAGGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGTGAATTACATAAAGTACATGCAGAATAACATCAAGCAACTTGGTGCTAAAAGAGATGAACTCAAGAAGAAGCTCTCAAATTATTCCAACATGGAAATAAATTATTACCACCATGATAATAACAATAATAATAATAATAAACCTACTACATCTAGCACTAACAGATTCTTCACTCTCCATGAGAGTAATAATGGTGTTCTTGGAATTGAAATCACCGGCGGCGGCGCGGCCGGAGGAGAAGATGAAGGTGTCACACTATCAGATATTCTGGCGATGCTGGTTGAAGAAGAAGGACTTGAAGTTCTTAGTTACCTTTCTAGCAGAGTCAATGGAAGATTGGTCCACAGTGTTCAGTGTGAGGTAAACAATTCCAACAGTGTTGATCTATCTGAGCTGAGAAGGAAACTTGGCAATTTAATTCAATAA 798 0.3822 MFPLQRGNELVIQFSNSPHQHKISQDLILQDYASLDVNDSDKIIFTKSQSSKKLFYDGAAAEEDNNNKDDSNNDDDHKKKKIVHREIERLRRKEMATLYSSLRSLLPLQFIKGKRSISDHMNEAVNYIKYMQNNIKQLGAKRDELKKKLSNYSNMEINYYHHDNNNNNNNKPTTSSTNRFFTLHESNNGVLGIEITGGGAAGGEDEGVTLSDILAMLVEEEGLEVLSYLSSRVNGRLVHSVQCEVNNSNSVDLSELRRKLGNLIQ 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151245g00002 265 Pfam Helix-loop-helix DNA-binding domain 80 132 IPR011598 GO:0046983
Stsc151245g00002 265 Gene3D - 70 158 IPR036638 GO:0046983
Stsc151245g00002 265 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 79 131 IPR011598 GO:0046983
Stsc151245g00002 265 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 66 263 - -
Stsc151245g00002 265 Coils Coil 128 155 - -
Stsc151245g00002 265 CDD bHLH_AtORG2_like 80 150 - -
Stsc151245g00002 265 FunFam Transcription factor bHLH126 71 159 - -
Stsc151245g00002 265 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 149 IPR036638 GO:0046983
Stsc151245g00002 265 SMART finulus 85 137 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151245g00002 Stsc-Chr151245 19514 21148 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151245g00002 73 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 40.426 3.81e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151245g00002 HLH 2.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151245g00002 - - aip:107644748 367.851