Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151245g00001 ATGGGAAAAGGCAAGGAGAAGGAGCTTCATCAGGTACCTATTTGGGGGCTAGAAAATAATAATAATTATAACAATATTATTAGCATAGAAAATAATAATAACAATAATAATGAAGAAAACAAGAAGTGGATGCATAGAGAGACAGAAAGACAAAGAAGGCAAGAGATGGGGATGCTTTGTGCCACTCTTAGATCTCTTCTACCTTTAAAATATATTAAGGGAAAGAGGTCAACTTCTGATCACATGTATGAGGCTGTGAATTACATAAACCAGCTTCAGAATAAGGTGAAGAAGCTGGAAGCTAAGAGGGATGAATTAAAGAAGCATTTTTCTGATCTGAATGCATCAATTGATGATGCTAATGATGATGATGATAATGATGAAAGTATTTTGCATCTTCCACCCTATGTTGTTGTTCATCCTTTGCAAGGAGTAGGTGTTGAAATTAGTTGCAGTTACAGCTTCAAGAAGTGTTTGTGTCCTTTGTCAAGGTTGCTACACATTCTAATTGGTGAAGGGCTTAACATAATCAACACTATTTCAACCAAAAGAAATGGAAGATTCATACACACTATCCAATCAGAGGATCCAAATATGAGTAGTGGTGCTGATTACTCTGAGCTGCAAAGAAAGCTTACAGAAGCAATATCATCATCATCATCTTCAAGCTTACAACAGACTTTGATTGGACCTGAAAGCTGCTTATTATATCTTAATTCCTGA 723 0.3568 MGKGKEKELHQVPIWGLENNNNYNNIISIENNNNNNNEENKKWMHRETERQRRQEMGMLCATLRSLLPLKYIKGKRSTSDHMYEAVNYINQLQNKVKKLEAKRDELKKHFSDLNASIDDANDDDDNDESILHLPPYVVVHPLQGVGVEISCSYSFKKCLCPLSRLLHILIGEGLNIINTISTKRNGRFIHTIQSEDPNMSSGADYSELQRKLTEAISSSSSSSLQQTLIGPESCLLYLNS 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151245g00001 240 FunFam Transcription factor bHLH126 32 120 - -
Stsc151245g00001 240 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 33 215 - -
Stsc151245g00001 240 Gene3D - 31 122 IPR036638 GO:0046983
Stsc151245g00001 240 SMART finulus 46 98 IPR011598 GO:0046983
Stsc151245g00001 240 Pfam Helix-loop-helix DNA-binding domain 42 93 IPR011598 GO:0046983
Stsc151245g00001 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 40 92 IPR011598 GO:0046983
Stsc151245g00001 240 CDD bHLH_AtORG2_like 41 108 - -
Stsc151245g00001 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 39 113 IPR036638 GO:0046983
Stsc151245g00001 240 Coils Coil 82 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151245g00001 Stsc-Chr151245 865 2051 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151245g00001 34 212 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G51780 43.017 1.65e-36 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151245g00001 HLH 3.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151245g00001 - - ahf:112751692 368.622