Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151244g00006 ATGCAGATGTTTCTTTCTTTAAGGATGTTTACCTTTCTCTGTTGCCTTCTCTTCATAGCTAACTCAGCACCTAAATCATACGCTTCAAACACTTCGCAAGAGTTCCAGTACTTCTGTGATGAGAAAAACATTACCCTGGACATCGAAGGGAACTACACGACCAATAGCACATACCATACCAACCTCAACACTCTTTTGTCAAATATTGTAAACAACAAAGAGATCGATTACGGTTTCTACAACTTCTCATACGGTGACTTCCCAAACAGAGTATACGCCATTGGACTATGTAGGGGAGACATTAAAACGGATCAGTGCCGAGATTGCCTGAACCAATCCAGAGCAAATCTCACGGCAGTTTGTCCGAATCGCAAGGTGGCGATTGGGTGGTACGACGACGAAATTTGTATGCTGCGATACTCAAATCGGAGCATATTCGATCGGATGGACAACGGACCGGCTTATTACAAGCATAACGACAATAAAACAAAGGATTTGAATGAGTTCAATAAAAAATTGAATGATTTGTTGAATGGTTTGAAAAGCAAAGCATCTTCCGGTGACTCTAAGTCAAAGTATGCTGTGGGAAACTTCAGTCTTTCTGATTTTGATCATGTTTATGGTCTTGTTCAGTGCACGCCTGATTTGTCTGGAACAGATTGTGAAGACTGCATAGCTCAATCTATTGAAAGAATTCCAAAAGATTGTTGTAAGGATGACATAGGTGGTAGGGTTGTTAGGCCAAGTTGTTTCTTGAGATTTGAGACGTCGTATCAATTCTATGGGGAAACGGCGTATAGGCGACCGCCGCCGCCAACATCTCCACCGTCTTCAGGATCAGGAGGAAAGAGTCATAATTCACTAATCATCGCCATTACAGTATCTATAGTGGCCGTGATTGTGATTGTAATTATTTTTACCCGCATTTATCAAAGAAAGAGGAAGCAAAGGAAAAGCAGATCAAATGAAGATGACACTGAAGATATCAAAATTGTTGAGTCATTACTATTTAACTTGGATAGTATACGAGACGCTACAAATGACTTTTCTGATGATAATAAACTAGGACAAGGTGGATTTGGGGCTGTTTACAAGGGTATCCTCTCTGATGGACAAGAAATTGCTGTAAAAAGGTTGGTGAGTAGTTCTTGTCAAGGAGATGTAGAATTTAAGAATGAGGTGTTGTTACTGGCTAAGCTTCAACATCGAAATTTAGTTAGGCTACTCGGATTTTGTTTGGAAGGAAGAGAAAGGTTACTCATTTATGAATTTGTGCCCAATAAAAGTCTTGATTACTTTATATTCGATCCCACCAAGAGTGCAAATTTGGACTGGGAAAGCCGCTGGAGAATCATTGAAGGCATTGCTCGAGGCCTTCTTTACCTTCATGTGGACTCTCGATTGCGCATTATTCACCGTGACCTCAAAGCAGCAAATATTCTCTTAGACGAAGAAATGAATCCTAAAATATCAGATTTTGGTACTGCAAAACTGTTTGCTATAGATCAAACTCATTCTGATACAAACAAAATTGTTGGGACCTATGGATATATGGCACCTGAATATCAATTTTTTGGACAAATTTCAATCAAATCAGATATGTATAGTTTTGGTATACTAGTTCTTGAAATTGTAAGTGGTGAGAAAAGCGGTGGTGATCGTCATCGTGAGAATTTAGAGACCCTTACGAACTTTGTATGGAGAAATTGGAAGGATGGGACAGTTACAAACATTGTAGATGCCAAATTAAACAATTGTTCACAGAATGAAATAATGAGATGCATCCACATTGCTTTACTATGTGTTCAAGCAAATGAAGCTGATAGACCAACCATTGATACAGTTTTACTCATGCTTAACAGTCATACAGTTCCTCTTGCAGTACCTTCAGAACCTGCATTTTTGCTGAATTCATCATGGGACTATGTTTCAATGGAAACAAGATCAAACACATCCACAAATAGACCAGCACAAGAATCTGTTAATGAAGCTTCAATTACTAAACCATACCCTCGCTAG 2019 0.3908 MQMFLSLRMFTFLCCLLFIANSAPKSYASNTSQEFQYFCDEKNITLDIEGNYTTNSTYHTNLNTLLSNIVNNKEIDYGFYNFSYGDFPNRVYAIGLCRGDIKTDQCRDCLNQSRANLTAVCPNRKVAIGWYDDEICMLRYSNRSIFDRMDNGPAYYKHNDNKTKDLNEFNKKLNDLLNGLKSKASSGDSKSKYAVGNFSLSDFDHVYGLVQCTPDLSGTDCEDCIAQSIERIPKDCCKDDIGGRVVRPSCFLRFETSYQFYGETAYRRPPPPTSPPSSGSGGKSHNSLIIAITVSIVAVIVIVIIFTRIYQRKRKQRKSRSNEDDTEDIKIVESLLFNLDSIRDATNDFSDDNKLGQGGFGAVYKGILSDGQEIAVKRLVSSSCQGDVEFKNEVLLLAKLQHRNLVRLLGFCLEGRERLLIYEFVPNKSLDYFIFDPTKSANLDWESRWRIIEGIARGLLYLHVDSRLRIIHRDLKAANILLDEEMNPKISDFGTAKLFAIDQTHSDTNKIVGTYGYMAPEYQFFGQISIKSDMYSFGILVLEIVSGEKSGGDRHRENLETLTNFVWRNWKDGTVTNIVDAKLNNCSQNEIMRCIHIALLCVQANEADRPTIDTVLLMLNSHTVPLAVPSEPAFLLNSSWDYVSMETRSNTSTNRPAQESVNEASITKPYPR 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151244g00006 672 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Stsc151244g00006 672 CDD STKc_IRAK 355 620 - -
Stsc151244g00006 672 ProSiteProfiles Gnk2-homologous domain profile. 151 259 IPR002902 -
Stsc151244g00006 672 MobiDBLite consensus disorder prediction 647 665 - -
Stsc151244g00006 672 ProSitePatterns Protein kinases ATP-binding region signature. 355 377 IPR017441 GO:0005524
Stsc151244g00006 672 SMART serkin_6 349 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151244g00006 672 FunFam Cysteine-rich receptor-like protein kinase 28 425 627 - -
Stsc151244g00006 672 Gene3D Transferase(Phosphotransferase) domain 1 425 626 - -
Stsc151244g00006 672 MobiDBLite consensus disorder prediction 647 672 - -
Stsc151244g00006 672 Gene3D Phosphorylase Kinase; domain 1 309 424 - -
Stsc151244g00006 672 Pfam Salt stress response/antifungal 161 256 IPR002902 -
Stsc151244g00006 672 Pfam Salt stress response/antifungal 50 142 IPR002902 -
Stsc151244g00006 672 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151244g00006 672 ProSiteProfiles Gnk2-homologous domain profile. 40 145 IPR002902 -
Stsc151244g00006 672 Pfam Protein kinase domain 350 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151244g00006 672 SUPERFAMILY Protein kinase-like (PK-like) 330 619 IPR011009 -
Stsc151244g00006 672 FunFam Cysteine-rich receptor-like protein kinase 10 153 260 - -
Stsc151244g00006 672 FunFam Cysteine-rich RLK (RECEPTOR-like protein kinase) 10 38 145 - -
Stsc151244g00006 672 FunFam Cysteine-rich receptor-like protein kinase 10 311 424 - -
Stsc151244g00006 672 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 47 670 - -
Stsc151244g00006 672 Gene3D - 153 260 IPR038408 -
Stsc151244g00006 672 Gene3D - 43 144 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151244g00006 Stsc-Chr151244 19451 26742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151244g00006 7 672 Receptor kinase-like Gene Family AT4G21410 46.254 0.0 570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Stsc151244g00006 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151244g00006 - - var:108324787 776.163