Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151243g00007 ATGTATCCTTTACAGCAGGAGAGCAATGAAGTGGTGATCCAATTCTGTTCTAACAATGTCGACCAGCAACCACACAAAGATCTGATTCTCCATCATTGTGATTCTTCGCTTCTTCATAAAAAATTAGTCATCCCCCCAAGGAAGAAAATATTTTCTGGCAATAACAAGAATGACAGCAGAAGCAATAAGGTGGCCCATAGAGACATCGAAAGGCAAAGGAGGAAACAAATGGCTACCCTTCATGCTTCCCTTAGATCCCTTCTCCCTCTTCAATTCATCAAGGGAAAGCGTTCGATATCAGATCAAATAAAGGAGGCAGTGAATTACATAAAGCAGCTTCAGAATAACTTGAAGGAACTCACTGCCAAGAGGGATAAACTCAAAAAACTCTCTTCATCATCAATAATAACAACTAATTCCCTGGCCCCTGAAAACCCTCATTACAAAAACCATGTTGCTGCAGCTTCTTCTACAAGTTTCTCGGTCCAGTTGAATGATATTGGAACTGATGATGAGGGAATGATTGAAATCACCTGTTGTTGTAATTATTCATACAGTAGAGATCAGCGAGAGGAACAAGTGGTTCCACTTTCAAAGTTGCTGAAATTAGTTCTTCAAGAGGGGCTCCATGTTGTTACTTCCCTTTCAACTCAACTCAATAATGCAACACTCATCCACACTCTCCACTGTCAGGTTAAATCCAACAACAGTGTGGATCTGTCTGAGCTGAGAAGCAAATTGGTCAATGAAATTTCATCATCATTTAGGTGCTATCTCTAA 780 0.4013 MYPLQQESNEVVIQFCSNNVDQQPHKDLILHHCDSSLLHKKLVIPPRKKIFSGNNKNDSRSNKVAHRDIERQRRKQMATLHASLRSLLPLQFIKGKRSISDQIKEAVNYIKQLQNNLKELTAKRDKLKKLSSSSIITTNSLAPENPHYKNHVAAASSTSFSVQLNDIGTDDEGMIEITCCCNYSYSRDQREEQVVPLSKLLKLVLQEGLHVVTSLSTQLNNATLIHTLHCQVKSNNSVDLSELRSKLVNEISSSFRCYL 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151243g00007 259 Coils Coil 96 130 - -
Stsc151243g00007 259 SMART finulus 67 119 IPR011598 GO:0046983
Stsc151243g00007 259 FunFam Transcription factor bHLH126 53 141 - -
Stsc151243g00007 259 Gene3D - 51 140 IPR036638 GO:0046983
Stsc151243g00007 259 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 61 113 IPR011598 GO:0046983
Stsc151243g00007 259 Pfam Helix-loop-helix DNA-binding domain 63 114 IPR011598 GO:0046983
Stsc151243g00007 259 CDD bHLH_AtORG2_like 63 130 - -
Stsc151243g00007 259 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 55 248 - -
Stsc151243g00007 259 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 129 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151243g00007 Stsc-Chr151243 30981 32260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151243g00007 66 251 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 36.559 1.28e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Stsc151243g00007 HLH 6.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151243g00007 - - gmx:100775836 170.629