Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151242g00004 ATGGACGACCAAACTACTCTTACTATTAGGGACCCTGCAATTAAGCTTTTTGGTCAGAAGATTCCCCTTCCCGGAGATCCTGATGTTCTTCTTCCCGCCGCTGATCCGGGCTCCCCGGCGGCTATGGATCAAGGAGAGGAGCTGCATGAAGAAGAGGAGGAAGAAGAAGAATATGAAGAGGATGAGGAGGAGGAAGACGGAGAACCCCAAGAGACTCAAGGGGACAAGGATGCCGAAGCTGAAAATCTTACCACGCAAGAGCAAGAAGCTGATCCTCCTCCTAATGTAGAAGAGAACAAGAAATCAGCCACATCACCTGAGGCTATGGTGAATCCAAAAACACCTGCCATAGAAGAAGAGTCTGCAAAATCAAAAAGTGACAAGTCAGAGAAGGAACAAAGCGACACATCCAATCCGCAAGATCAGAAACCCCTGAAGAAGCCAGATAAGTTGCTTCCATGCCCCCGCTGCAATAGCATGGATACTAAATTCTGTTACTACAACAACTACAACGTCAACCAGCCACGTTATTTCTGCAAAGCCTGTCAACGATACTGGACTGCAGGTGGCACCATGAGGAATGTTCCGGTTGGGGCAGGACGGCGAAAAAACAAGAACTCTGCCAACCATTATCGCCACATCACAATCTCTGAGGCTCTTCAAGCAGCTAGAATTGATGCTCCTAACGGGACTCATCTCCCTGCATTGAAAAGCAATGGAAGAGTCCTCAACTTCGGAATAGATGCGCCAATCTGCGATTCCATGGCATCTGTTCTTAACCTTGGAGAGAAAAAGGTTCTTAATGGCACAAGAAACGGATTCCATCATGGTTATGACGATCAAAGATTGAAAGTTCCTTGCAAAAGTGGGGAAAACGGCGAAGCCTGTACAAGTTCATCGCCTGTTGCAGTTTCAAATGGAGAAAACAGTAAAAGTACTTTCCAAGAACCGATGCTTCCAAACAATGGTTACCTTCCTCAAGTTCCTTGCATTGCTAGTGTTCCTTGGCCTTATCCGTGGAATGCTCCAATTCCCTCACCAGCTATGTGTCCTCCAGGATTTCCTGCCCTTCCTTTCTATCCTGCAGCTTTTTGGAACTGCAGCATGCCAGGGAACTGGAATGTTCCATGGTTTCCTCCACAGTCCTCTCCTTCAAACCCGAAATCTCCAAGTTCTGGTCCAAATTCTCCAACTCTTGGGAAGCACTCTAGGGACAGTGACATGAGTAACCAAGACTCTCTGAGCAAAGATGAGCCACCAAAGCAGAGAAATGGAAGCGTTTTGGTTCCCAAAACATTGAGAATCGATGATCCAAGTGAAGCTGCAAAGAGTTCTATATGGGCAACTCTAGGAATCAAGAATGAATCCATCAGTGGGGGAGGCATGTTTAAGGCCTTCCAATCAACAAAAGAAGAAAAGAATCAAGTTGAAGCTTCTCCTGTGTTGCGGGCTAACCCTGCAGCTTTGTCGAGATCCCTTAATTTTCACGAGAACTCGTGA 1500 0.4667 MDDQTTLTIRDPAIKLFGQKIPLPGDPDVLLPAADPGSPAAMDQGEELHEEEEEEEEYEEDEEEEDGEPQETQGDKDAEAENLTTQEQEADPPPNVEENKKSATSPEAMVNPKTPAIEEESAKSKSDKSEKEQSDTSNPQDQKPLKKPDKLLPCPRCNSMDTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNSANHYRHITISEALQAARIDAPNGTHLPALKSNGRVLNFGIDAPICDSMASVLNLGEKKVLNGTRNGFHHGYDDQRLKVPCKSGENGEACTSSSPVAVSNGENSKSTFQEPMLPNNGYLPQVPCIASVPWPYPWNAPIPSPAMCPPGFPALPFYPAAFWNCSMPGNWNVPWFPPQSSPSNPKSPSSGPNSPTLGKHSRDSDMSNQDSLSKDEPPKQRNGSVLVPKTLRIDDPSEAAKSSIWATLGIKNESISGGGMFKAFQSTKEEKNQVEASPVLRANPAALSRSLNFHENS 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151242g00004 499 PANTHER CYCLIC DOF FACTOR 2 10 499 IPR045174 GO:0003700|GO:0006355
Stsc151242g00004 499 ProSiteProfiles Zinc finger Dof-type profile. 152 206 IPR003851 GO:0003677|GO:0006355
Stsc151242g00004 499 MobiDBLite consensus disorder prediction 405 419 - -
Stsc151242g00004 499 MobiDBLite consensus disorder prediction 18 153 - -
Stsc151242g00004 499 MobiDBLite consensus disorder prediction 118 150 - -
Stsc151242g00004 499 MobiDBLite consensus disorder prediction 380 435 - -
Stsc151242g00004 499 MobiDBLite consensus disorder prediction 46 72 - -
Stsc151242g00004 499 MobiDBLite consensus disorder prediction 85 109 - -
Stsc151242g00004 499 ProSitePatterns Zinc finger Dof-type signature. 154 190 IPR003851 GO:0003677|GO:0006355
Stsc151242g00004 499 Pfam Dof domain, zinc finger 150 206 IPR003851 GO:0003677|GO:0006355
Stsc151242g00004 499 Coils Coil 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151242g00004 Stsc-Chr151242 18832 22077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151242g00004 7 497 C2C2-Dof Transcription Factor Family AT3G47500 45.809 7.81e-122 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Stsc151242g00004 zf-Dof 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151242g00004 - - gmx:778113 689.878