Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151241g00013 ATGGCAGAGTCTTCTCTGAATCTCAAGATTACAGGCAAGAGCCATGTGAAGCCAAAGAAGAACATTGGTAGAAAAGAGTACCAACTTGTGACCTTTGATCTTCCCTACTTAGCATTCTACTACAACCAGAAGCTGCTGTTTTACAAAGGGGGTGACTTTGAAGGAATGGTGGAGAAGGTGAAAGAGGGTCTGAGTGTGGTTCTTGAGGAGTTTCATCAGCTAGCAGGGAAGATAGGGAAAGATGAAGAAGGGGTTTTCAGAGTGGAGTATGATGATGACATGGATGGTGTTGAAGTAACTGAGGGTGTTGCTGAGGATGTTGCAGTTGAAGATCTTGCTGTTGCTGAGAGTAGCAGTTCATTGTTGGAACTTATTCCTTACAATGGTATCTTGAATTTGGAAGGCATGCATAGGCCTTTGCTTGCAATTCAGCTGACCAAATTGAAAGATGGGCTTGCAATGGGCTTAGCCTTCAACCATGCAGTTCTTGATGGGACTTCCACGTGGCAATTCATGAGTTCATGGGCCGAGATCTGCAGCGGCGCGCCATCCACCGTAGCTCCACCCTTCCTTGACCGGACCAAGGCCCGAAATACCCGGGTGAAGCTTGACCTCTCAGTGCCCGAGCCCAATGGGCCTTCATCTGAGAACGGAGAAAAGCCCAAGCCCAAACTAAGGGAAAAGATCTTCAAATTCTCCGAGTCAGCCATTGACAAAATCAAGTCAACGGTCAACGAAAACCCACCATCTGACGGCTCAAAGCCATTCTCAACATTTCAAGCCCTCTCAGCCCATGTTTGGCGCCACATAACCCATGCACGTAACCTAAAGCCCGAAGACTACACAGTCTTCACTGTATTTGTAGATTGTAGAAAAAGAATTGATCCACCAATGCCTGAGGCCTATTTTGGAAACCTAATCCAAGCCATATTTACCGTTACGGCGGCCGGGCTCCTGTCGGCCCACCCGTCGCAATTCGGCGCTTCAATGGTCCAGAAGGCAATTGAAGCGCACAATGCAAAGGCAATTGATGAGAGGAACAAAGAGTGGGAGAGTGCACCAAAGATTTTCCAATTCAAAGATGCTGGAGTTAATTGTGTGGCTGTGGGAAGCTCCCCAAGGTTTAAAGTTTATGACATTGATTTTGGTTGGGGCAAGCCTGAGAATGTGAGGAGTGGCACCAATAACAAGTTTGATGGTATGATTTATTTGTATCCTGGTAAGAGTGGTGGCAGAAGCATTGATGTTGAGTTGACTTTGGATCCCAATGCCATGGAGATTTTGGAGCAAGACAAAGACTTTCTTCTTCTTGAGGTTTAA 1320 0.4659 MAESSLNLKITGKSHVKPKKNIGRKEYQLVTFDLPYLAFYYNQKLLFYKGGDFEGMVEKVKEGLSVVLEEFHQLAGKIGKDEEGVFRVEYDDDMDGVEVTEGVAEDVAVEDLAVAESSSSLLELIPYNGILNLEGMHRPLLAIQLTKLKDGLAMGLAFNHAVLDGTSTWQFMSSWAEICSGAPSTVAPPFLDRTKARNTRVKLDLSVPEPNGPSSENGEKPKPKLREKIFKFSESAIDKIKSTVNENPPSDGSKPFSTFQALSAHVWRHITHARNLKPEDYTVFTVFVDCRKRIDPPMPEAYFGNLIQAIFTVTAAGLLSAHPSQFGASMVQKAIEAHNAKAIDERNKEWESAPKIFQFKDAGVNCVAVGSSPRFKVYDIDFGWGKPENVRSGTNNKFDGMIYLYPGKSGGRSIDVELTLDPNAMEILEQDKDFLLLEV 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151241g00013 439 Gene3D - 5 207 IPR023213 -
Stsc151241g00013 439 FunFam Tryptamine hydroxycinnamoyl transferase 211 432 - -
Stsc151241g00013 439 MobiDBLite consensus disorder prediction 202 224 - -
Stsc151241g00013 439 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 10 435 - -
Stsc151241g00013 439 Gene3D - 209 431 IPR023213 -
Stsc151241g00013 439 Pfam Transferase family 8 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151241g00013 Stsc-Chr151241 66107 69103 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151241g00013 58 430 Monolignol Biosynthesis Gene Families AT5G48930 26.142 8.92e-36 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151241g00013 K19747 - gmx:100790669 748.814