Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151241g00001 ATGTCATCGCCGGGGTTCACCGGCGGTGGACCATCAGATTTCTTCACCGGAGCAGCCCGATCCACCACCATAAACAACAACCCCAGCGCCACCGCCTCCGCCGTCATGAACAACCACCGGCACCTCCACCCTTCCCACCCTCTCTACCGCACCCAACAGCAGCTGCCCGCACTGTTTCTAGATCCTTCCTCACAGATCACACCTCGCCACCAAACACCAACATCACAACCACCACCAACAACCCTCATCGGTAAACGCACCCTCGCCGAGTTTCAAACCCAACAACAACATAACCACCACTTCAATAACCACAATAACAACCACCTCCTTAACAACAACAACCACAACAGCAATAACAAACATGTCCTCTCTAACTTCCTACACCGCTCCGTGAAGCCAAGAACGGCGTCGTTTCACACCGGTTCCCCTTTGTCCCCTTTATCGCCCATAGATTTCTCAATCCCTGAATTGCAAATCCCTTCTTCAACTCCAACTCACGCTTTCCAAACGCAGCGTTTTGGCATGCCCCTCCTCCACCAGCTTCGCCCTAACCCCAATAATAATAATTTCCCGCTTTTGGAACTGGAGAAGCAGCTTCTAGAAGATGAAGAAGAAGAAGGTGAAGCCGATGCGGCTTCTGTGATCACAACAAGCGAGTGGTCAGAGACCATTCAGAATCTCATGGGAAACGGGCCCGCACAGAAGCCCGCTTCTTCGTCCCCAACATCTTCGACAACGTCTTCAACTTCTTCTTCTTCCTCCGTGGCTTCCCCTGCCATAGCTTGCTGGAAGCAGACGCTAATGGAGGCCGCATCTGCCATAGCCGAAGGCAAACAAGATTCTGCCACTGAGATCCTGGCCCGGTTGAGTCAAGTTTCTAAGCCCGATGGGAATTCGGATCAGAGGTTGATGGATTGCATGGTTTCGGCACTGAAATCGAGGGTAAACCCGCTGGAGAATCCTCCTCCCGTAGCCGAGTTGTTCAGCAACGAACACGCCGAGTCGACTCAGTTGATGTTTGAAAACTCGCTCTGTTTCATGGTAGGGTTCATGGCCGCCAACTTCGCAATCCTCGAAGCTGCATTTGAGGACAAAACGGAGCTGAAGAGGTTCTGCGTGGTTGATTTCGATATAGGCCAGGGGAAACAGTACGTCAGCCTTTTACTCGCTCTCTCCGCGCGTGGAAGAACACCGCCGGCCATTGTTAGGATCGTGGCGGTGGCGGACACCGCCGGCCAAGAAGAGAAGTTAAAGTCTGTGGGTGACATGCTTGCAAGACAGGCTGAGAGGTTTAGGATCGGATTCGAGTTCAAAATCGTTCTGGTGACTCAGCGATTCCCCGAGTTGACCCGCGAGTCGCTGGGATGCGACGCGGACGAGTTTCTCGCTGTGAACTTCGCTTTCAAATTGAACCGAATCCCAGACGAGAGCGTGTCCACGGAGAATCCACGCGACGAGCTCTTGAGGCGCGTGAAGTCACTCTCACCGCGCGTGGTTACGATAATTGAGCAGGAGATAAACGCCAACACGGCGCCGTTTCTGGCGCGCGTGGCCGACACGTGTTCATATTACGGCGCGCTCTTCGACTCGGTGGAAGCCGCACTGGGCAAGGACAATAATAGTAACTCGGAGCGAGTCAAGGTGGAGGAAGGACTGAGTCGGAGGGTGTGTAACTCGGTGGCGTGTGAAGGGAGGGACCGCGTGGAGCGTTGCGAAGTTTTCGGAAAATGGCGGGCACGCATGGGAATGGCGGGGTTCAAGAACAAGCCACTGAGTCAGAGCGTGGCCGAGTCGATCAAGACACGACTCGCCCAGGGTAACAACAGTAACAACCGAGTCAACTCGGGACTCACCGTTAAAGAAGAGAACGGTGGGATTTGCTTTGGATGGATGGGGAGAACTCTCACCGTCGCTTCTGCTTGGCTCTGA 1929 0.5407 MSSPGFTGGGPSDFFTGAARSTTINNNPSATASAVMNNHRHLHPSHPLYRTQQQLPALFLDPSSQITPRHQTPTSQPPPTTLIGKRTLAEFQTQQQHNHHFNNHNNNHLLNNNNHNSNNKHVLSNFLHRSVKPRTASFHTGSPLSPLSPIDFSIPELQIPSSTPTHAFQTQRFGMPLLHQLRPNPNNNNFPLLELEKQLLEDEEEEGEADAASVITTSEWSETIQNLMGNGPAQKPASSSPTSSTTSSTSSSSSVASPAIACWKQTLMEAASAIAEGKQDSATEILARLSQVSKPDGNSDQRLMDCMVSALKSRVNPLENPPPVAELFSNEHAESTQLMFENSLCFMVGFMAANFAILEAAFEDKTELKRFCVVDFDIGQGKQYVSLLLALSARGRTPPAIVRIVAVADTAGQEEKLKSVGDMLARQAERFRIGFEFKIVLVTQRFPELTRESLGCDADEFLAVNFAFKLNRIPDESVSTENPRDELLRRVKSLSPRVVTIIEQEINANTAPFLARVADTCSYYGALFDSVEAALGKDNNSNSERVKVEEGLSRRVCNSVACEGRDRVERCEVFGKWRARMGMAGFKNKPLSQSVAESIKTRLAQGNNSNNRVNSGLTVKEENGGICFGWMGRTLTVASAWL 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151241g00001 642 MobiDBLite consensus disorder prediction 1 29 - -
Stsc151241g00001 642 ProSiteProfiles GRAS family profile. 254 642 IPR005202 -
Stsc151241g00001 642 Pfam GRAS domain family 264 641 IPR005202 -
Stsc151241g00001 642 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 236 630 IPR005202 -
Stsc151241g00001 642 MobiDBLite consensus disorder prediction 226 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151241g00001 Stsc-Chr151241 2427 4486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151241g00001 45 641 GRAS Transcription Factor Family AT5G52510 44.923 6.88e-150 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc151241g00001 GRAS 1.1e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151241g00001 - - gmx:100808172 667.922