Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151240g00001 ATGCGCTGCTATACTCTTCCTAGTTCTTATCACCTTCAAAAATTAACATCACCACCACTCCAATTCCCATCCAAAACAGAAACAACCAACAACTTCTATCCGCCCAAACCCGACTCCGCCAGTACGACCCGGCCCGCGCTGCTAGTGAGCGTCAAAGCGTCGGCGTCGTTCGATGCGGTGGCGGTGGAGGCGGATGAAGAAGGGAGCGTGAGCTTGTACGAGGTTCTTGGCGTGGCGGTGTCCGGGACGGAGGTGGAATTGAAGAAGGCGTACAAGAAGCTGGCGAGGAAGTACCACCCGGACGTGTCGCCGCCGGGTCGGGCTGAAGAGTACACGAAGAGGTTTATTCGTGTGCAGCAGGCGTACGAGACTCTGTCTGATCCCGTATTGAGAGCGGTTTATGATAGAGAAATGGCGATGGCCATCAAATTTCCGATCTCCTCTCGCTGCTGCCAAGCCCGCCACCGTCGTCAACCGCATCCTTGCCGTCACCAGGTTATGGAACAAAGAAATGAATGGAAAACTCGTTGGGAGTCACAACTCTCAGGATTGAAGAGAAGAAGCCAAAGTAAAAATGATGGACGCAATGAATCTTGGGCAGCTCAAATGCGTAATAATAATAATTAA 627 0.5199 MRCYTLPSSYHLQKLTSPPLQFPSKTETTNNFYPPKPDSASTTRPALLVSVKASASFDAVAVEADEEGSVSLYEVLGVAVSGTEVELKKAYKKLARKYHPDVSPPGRAEEYTKRFIRVQQAYETLSDPVLRAVYDREMAMAIKFPISSRCCQARHRRQPHPCRHQVMEQRNEWKTRWESQLSGLKRRSQSKNDGRNESWAAQMRNNNN 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151240g00001 208 ProSiteProfiles dnaJ domain profile. 71 138 IPR001623 -
Stsc151240g00001 208 MobiDBLite consensus disorder prediction 194 208 - -
Stsc151240g00001 208 ProSitePatterns Nt-dnaJ domain signature. 115 134 IPR018253 -
Stsc151240g00001 208 Gene3D DnaJ domain 56 148 IPR036869 -
Stsc151240g00001 208 MobiDBLite consensus disorder prediction 182 208 - -
Stsc151240g00001 208 Pfam DnaJ domain 72 135 IPR001623 -
Stsc151240g00001 208 PRINTS DnaJ domain signature 110 130 IPR001623 -
Stsc151240g00001 208 PRINTS DnaJ domain signature 73 91 IPR001623 -
Stsc151240g00001 208 PRINTS DnaJ domain signature 91 106 IPR001623 -
Stsc151240g00001 208 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 49 207 - -
Stsc151240g00001 208 CDD DnaJ 73 127 IPR001623 -
Stsc151240g00001 208 SMART dnaj_3 70 130 IPR001623 -
Stsc151240g00001 208 MobiDBLite consensus disorder prediction 16 42 - -
Stsc151240g00001 208 SUPERFAMILY Chaperone J-domain 69 141 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151240g00001 Stsc-Chr151240 7222 10361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151240g00001 73 135 C2H2 Transcription Factor Family AT1G74250 42.424 1.33e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151240g00001 - - ahf:112795692 258.07