Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151239g00001 ATGAGAGATGAAATTAAAGATTACTTCATTCTCAAGGTCAGAGTTAAGCATCAACTACGAATTCCTTCAGAATCAAGACTCATTGATTCGTTTTCATCTGAAAGCTCAATTCTAATTCAAGTGCCTGAATTCCTTCAAAACGGTTCATGTCACATGCAAATACATTTTCCTAGTGATATTATACCAGACGTGTTGATGCATGATATGATGCCAAAGGTCATACTCTACGCCGAAGCCATAACCGAAACTCGTCGTTGGGGATTCCTCTACGAAAGACCCGATTTTCGTTTGTTCAGTTTGAATTTGGATATTATTATCCTAAGATCGTTTTGGAACGTTGATGAGGTTATCACCGACATGGTTATTGAGGAGTCCATGGGAGATACTAATAATGTTAAGATGGTTCCTGCATCGGAGAGTGCCATTGAGTCTCTTGAGAGTGTGAAGCTTGAAAATCAAAACAATGTAGCTGATGAGAGGTGCAGTATTTGTCTAACGGAATTTGAATATGGTGAAGATGCAGAACAAGTTTCATCAATGCCTTGTAAGCACGTGTATCATCAAGAATGTCTTGTTCACTGGCTGAAGACTAGTCATTTATGTCCTTTATGTCGCTACGCAATGCCTATTTAG 633 0.3886 MRDEIKDYFILKVRVKHQLRIPSESRLIDSFSSESSILIQVPEFLQNGSCHMQIHFPSDIIPDVLMHDMMPKVILYAEAITETRRWGFLYERPDFRLFSLNLDIIILRSFWNVDEVITDMVIEESMGDTNNVKMVPASESAIESLESVKLENQNNVADERCSICLTEFEYGEDAEQVSSMPCKHVYHQECLVHWLKTSHLCPLCRYAMPI 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151239g00001 210 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 91 209 - -
Stsc151239g00001 210 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 209 IPR013083 -
Stsc151239g00001 210 Pfam Ring finger domain 160 205 IPR001841 -
Stsc151239g00001 210 SMART ringv_2 160 205 IPR011016 GO:0008270
Stsc151239g00001 210 SMART ring_2 161 204 IPR001841 -
Stsc151239g00001 210 SUPERFAMILY RING/U-box 141 208 - -
Stsc151239g00001 210 ProSiteProfiles Zinc finger RING-type profile. 161 205 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151239g00001 Stsc-Chr151239 5553 6185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151239g00001 121 209 C3H Transcription Factor Family AT1G18760 37.079 6.26e-18 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151239g00001 - - adu:110276959 285.804