Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151238g00010 ATGGCGGAAGAGCACCGATGCCAAGCTCCGGAAGGCCACAAACTCTGTGCCAATAATTGCGGCTTCTTCGGTAGCACAACCACCATGGACCTCTGTTCCAAGTGCTATAGAGACGTTCTCTTAAAGGAGCAAGAACAAGCCAAGACCAAATCCACCATCGAAACCGCTCTCTCCAAATCCGCAACCGCATCACATGATTCACATCTATCTCCGCCGTCTCCAGCCGTGGATTTGCTCCCTCAACTGCCGCAGCTCATCGTCTCGCCGGAGATCGCGTCGGAATCGTCCGTATCGACGTCTCCAGCGGTCGTATCGGCAGTTCAGGCGAACCGGTGCGCAGCGTGCAGGAAACGGATCGGGTTGACCGGTTTTACGTGCAGGTGCGGGATCACGTTTTGCGGGACCCACAGGTACCCGGAGAAGCACGGGTGCGGGTTCGATTTCAAGACCGTAGGGAGGGACGAGATAGCGAGGGCGAATCCCGTGATCAAAGCCAGGAAGCTCGACAAGATTTGA 516 0.564 MAEEHRCQAPEGHKLCANNCGFFGSTTTMDLCSKCYRDVLLKEQEQAKTKSTIETALSKSATASHDSHLSPPSPAVDLLPQLPQLIVSPEIASESSVSTSPAVVSAVQANRCAACRKRIGLTGFTCRCGITFCGTHRYPEKHGCGFDFKTVGRDEIARANPVIKARKLDKI 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151238g00010 171 ProSiteProfiles Zinc finger AN1-type profile. 106 152 IPR000058 GO:0008270
Stsc151238g00010 171 FunFam Zinc finger AN1-type containing 6 88 167 - -
Stsc151238g00010 171 SUPERFAMILY AN1-like Zinc finger 102 166 IPR035896 -
Stsc151238g00010 171 Pfam A20-like zinc finger 15 37 IPR002653 GO:0003677|GO:0008270
Stsc151238g00010 171 SMART A20_3 13 37 IPR002653 GO:0003677|GO:0008270
Stsc151238g00010 171 Gene3D - 87 167 IPR035896 -
Stsc151238g00010 171 Gene3D - 1 66 - -
Stsc151238g00010 171 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677|GO:0008270
Stsc151238g00010 171 PANTHER AN1-TYPE ZINC FINGER PROTEIN 12 171 - -
Stsc151238g00010 171 SMART AN1_Zf_4 112 149 IPR000058 GO:0008270
Stsc151238g00010 171 Pfam AN1-like Zinc finger 112 148 IPR000058 GO:0008270
Stsc151238g00010 171 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151238g00010 Stsc-Chr151238 49606 51176 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151238g00010 1 171 C2H2 Transcription Factor Family AT3G52800 49.133 3.16e-50 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151238g00010 - - lang:109347531 239.58