Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151237g00007 ATGTCCGGCCCGAGGCGACAGAGAAGGGACCGTGCACCGCTGCCGGAAGAGGAGAAAGGGAAAACCAAAATGGGCTCTGTGGCTACACCTCTTCTGATTAATCAGTTTATTCTATTTCCTGCTGCTGCTACCAAAACCGTCTGGAACTCCAAATTGGGTGGGAGTTTCAATAAAATGTGTAGAAGTACAGGAAACGGAATACTCAGTTTCTCCTTTGCTGGTGGCAACCACATAGTTGGGGGTAACTTTGCAATCAAATCAAAAATAAAGACTTCAGCTACTACTGTTGTAAATATAACCTCAAGTGACACATCCGAGGATCATGTTAAGAGAGAGGTTGAACAGCTTTTGGACCCAGAAGAAAGAGCAAAATTGCAACAGAATGTAACTCCTAACTTGGAAAAAATATCAACTGAAAAATGGAGCCCTCTGCACACTCTTGCTCTGTCAATGCAGATGAGTTGCATGGATAAGCTTCTTGAAAATGGTTTTGATATTGATTTCATTAATAAGGACGGTCTCACTGCACTTCATAAGGCAATTATAGGTAAAAAAGAAGCGGTGATAAGCCATCTTTTAAGGAAAGGTGCAAGTCCTCATGTGAAGGATAAGGATGGAGCCACTCCACTTCATTATGCGGTTCAAGTTGGTGCAAAGCAAACTGTGAAGTTATTGATCAAGTATAATGTTGATGTCAATGTTGCAGATCATGAAGGTTGGACTCCATTGCACATTGCTGTTCAAGGTAGAAACAGAGATATAGTGAAAATTTTATTAGTCAATGGTGCAGATAAAACAAGGAAAACTAAGGATGGAAAAACAGCACTGGATCTATGCTTATGTTATGGAAAAGATTTCAAATCTTATGAGATTGCTCAAGTAGTGAAGTTAGTTCCAGCTGACAGTGCTCTATGA 915 0.4044 MSGPRRQRRDRAPLPEEEKGKTKMGSVATPLLINQFILFPAAATKTVWNSKLGGSFNKMCRSTGNGILSFSFAGGNHIVGGNFAIKSKIKTSATTVVNITSSDTSEDHVKREVEQLLDPEERAKLQQNVTPNLEKISTEKWSPLHTLALSMQMSCMDKLLENGFDIDFINKDGLTALHKAIIGKKEAVISHLLRKGASPHVKDKDGATPLHYAVQVGAKQTVKLLIKYNVDVNVADHEGWTPLHIAVQGRNRDIVKILLVNGADKTRKTKDGKTALDLCLCYGKDFKSYEIAQVVKLVPADSAL 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151237g00007 304 Gene3D - 210 299 IPR036770 -
Stsc151237g00007 304 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Stsc151237g00007 304 Pfam Ankyrin repeats (many copies) 240 279 IPR002110 GO:0005515
Stsc151237g00007 304 Pfam Ankyrin repeats (3 copies) 147 236 IPR002110 GO:0005515
Stsc151237g00007 304 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 112 294 - -
Stsc151237g00007 304 ProSiteProfiles Ankyrin repeat profile. 238 270 IPR002110 GO:0005515
Stsc151237g00007 304 ProSiteProfiles Ankyrin repeat region circular profile. 172 204 - -
Stsc151237g00007 304 Gene3D - 102 209 IPR036770 -
Stsc151237g00007 304 PRINTS Ankyrin repeat signature 206 221 IPR002110 GO:0005515
Stsc151237g00007 304 PRINTS Ankyrin repeat signature 254 268 IPR002110 GO:0005515
Stsc151237g00007 304 ProSiteProfiles Ankyrin repeat region circular profile. 238 264 - -
Stsc151237g00007 304 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Stsc151237g00007 304 SUPERFAMILY Ankyrin repeat 131 283 IPR036770 -
Stsc151237g00007 304 ProSiteProfiles Ankyrin repeat region circular profile. 205 236 - -
Stsc151237g00007 304 ProSiteProfiles Ankyrin repeat profile. 139 171 IPR002110 GO:0005515
Stsc151237g00007 304 MobiDBLite consensus disorder prediction 1 23 - -
Stsc151237g00007 304 SMART ANK_2a 238 267 IPR002110 GO:0005515
Stsc151237g00007 304 SMART ANK_2a 271 304 IPR002110 GO:0005515
Stsc151237g00007 304 SMART ANK_2a 172 201 IPR002110 GO:0005515
Stsc151237g00007 304 SMART ANK_2a 139 168 IPR002110 GO:0005515
Stsc151237g00007 304 SMART ANK_2a 205 234 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151237g00007 Stsc-Chr151237 46553 49937 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151237g00007 125 270 Ion Channels AT2G25600 24.859 9.37e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151237g00007 - - lja:Lj0g3v0067589.2 374.4