Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151236g00006 ATGGGTAGTAGAGCTAGAACAGTCAACGTTAGCAGCACTGGGGACAGTAACAACGTTGTCAACGGGATGCCAAGTTACGCTCCTCCACCTCCTATGCCTTCTTCTTCTAGTTCCATGGGCATTGATGCAACTAATGTTCTTCCTTCTCGAATTTCTGAATTTGGAAACCTTGAACAGACTCTTGGATTTCGCGTTGAGGATGCCATCAATCTTAGCAGAAATCCATTGTTTAATCAACTACAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATGTTCAATTTGGTGCTTTAAGTAAGTCAATTGCAAACTCAGATATAAACCTATCTGCTGCAATTACTGGCTCTCAGACGTTGCCATTACAAAAAGATTTGCAACCAAATCTAGCTTCGACATCTGCTGGTCATCGTGAGAACTGGGGGGAGTCCAACATGGCGGATGCAAGTCCTAGGACGGATACCTCAACAGATGATACAGAAGATAAAAATCAAATGCCTGAAAGGGGTGAATCAAGTGAAAGATCAAAAGATAAAGCAGATCAAAAGACACTACGGCGGCTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGGTTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTTACCCAACTTGAGCAGGAGCTGCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCTCAGGAGATCAGGCCCATTCAATGAGTGGAAATGGTGCTATGGCCTTTGACGTGGAGTACGCACGATGGTTGGAAGAGCATAATAGGCAAACCAGTGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTCCGTACCATTGTCGACAATTTCATGACGCAATTTGATGATATCTTCAGGCTCAAGGGTATTGCTGCAAAAGCAGATGTTTTCCACATTCTTTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGATCGTCTGAGCTTCTTAAACTTCTTGTAAATCAACTGGAGCCTTTAACGGAGCAACAGTTGATGGGCATCTACAACTTGCAGCAGTCATCTCAGCAGGCCGAAGATGCGTTGTCTCAGGGAATGGATGCATTGCAGCAATCACTTGCCGAGACATTGGCGAATGGTGCACCTAACCCTTCGGGCTCTTCAGGAAATGTAGCAAATTACATGGGCCAAATGGCTATGGCCATGGGAAAGCTCGGTACTCTTGAAGGCTTTCTTCGACAGGTAACTTCAAATGCCTGCCTATCTTACTGTCCACTTTCCATTTTTTCTACTTTCATACTTCCGAAGTTATGA 1329 0.447 MGSRARTVNVSSTGDSNNVVNGMPSYAPPPPMPSSSSSMGIDATNVLPSRISEFGNLEQTLGFRVEDAINLSRNPLFNQLQMKSNSQALGADVQFGALSKSIANSDINLSAAITGSQTLPLQKDLQPNLASTSAGHRENWGESNMADASPRTDTSTDDTEDKNQMPERGESSERSKDKADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEHNRQTSELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGAPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQVTSNACLSYCPLSIFSTFILPKL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151236g00006 442 Coils Coil 201 228 - -
Stsc151236g00006 442 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700|GO:0006355
Stsc151236g00006 442 MobiDBLite consensus disorder prediction 130 183 - -
Stsc151236g00006 442 PANTHER TRANSCRIPTION FACTOR TGA9 136 419 - -
Stsc151236g00006 442 SMART brlzneu 178 241 IPR004827 GO:0003700|GO:0006355
Stsc151236g00006 442 MobiDBLite consensus disorder prediction 130 152 - -
Stsc151236g00006 442 Pfam bZIP transcription factor 181 222 IPR004827 GO:0003700|GO:0006355
Stsc151236g00006 442 CDD bZIP_HBP1b-like 182 234 - -
Stsc151236g00006 442 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700|GO:0006355
Stsc151236g00006 442 MobiDBLite consensus disorder prediction 1 38 - -
Stsc151236g00006 442 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
Stsc151236g00006 442 ProSiteProfiles DOG1 domain profile. 247 442 IPR025422 GO:0006351|GO:0043565
Stsc151236g00006 442 Gene3D - 181 233 - -
Stsc151236g00006 442 MobiDBLite consensus disorder prediction 153 183 - -
Stsc151236g00006 442 MobiDBLite consensus disorder prediction 1 23 - -
Stsc151236g00006 442 Pfam Seed dormancy control 265 339 IPR025422 GO:0006351|GO:0043565
Stsc151236g00006 442 FunFam BZIP family transcription factor 181 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151236g00006 Stsc-Chr151236 53753 58854 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151236g00006 145 420 bZIP Transcription Factor Family AT3G12250 72.887 8.40e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc151236g00006 DOG1 1.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151236g00006 K14431 - gmx:100780071 682.945