Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151236g00005 ATGGGTAGTAGAGCTAGAACAGTCAACGTTAGCAGCACTGGGGACAGTAACAACGTTGTCAACGGGATGCCAAGTTACGCTCCTCCACCTCCTATGCCTTCTTCTTCTAGTTCCATGGGCATTGATGCAACTAATGTTCTTCCTTCTCGAATTTCTGAATTTGGAAACCTTGAACAGACTCTTGGATTTCGCGTTGAGGATGCCATCAATCTTAGCAGAAATCCATTGTTTAATCAACTACAAATGAAATCAAATAGCCAAGCTCTAGGTGCTGATGTTCAATTTGGTGCTTTAAGTAAGTCAATTGCAAACTCAGATATAAACCTATCTGCTGCAATTACTGGCTCTCAGACGTTGCCATTACAAAAAGATTTGCAACCAAATCTAGCTTCGACATCTGCTGGTCATCGTGAGAACTGGGGGGAGTCCAACATGGCGGATGCAAGTCCTAGGACGGATACCTCAACAGATGATACAGAAGATAAAAATCAAATGCCTGAAAGGGGTGAATCAAGTGAAAGATCAAAAGATAAAGCAGATCAAAAGACACTACGGCGGCTAGCTCAAAATCGTGAGGCTGCCAGAAAAAGCCGGTTGAGGAAAAAGGCATATGTGCAACAATTAGAGAGCAGTAGGCTGAAACTTACCCAACTTGAGCAGGAGCTGCAGCGAGCCCGCCAGCAGGGAATATTTATTTCAAGCTCAGGAGATCAGGCCCATTCAATGAGTGGAAATGGTGCTATGGCCTTTGACGTGGAGTACGCACGATGGTTGGAAGAGCATAATAGGCAAACCAGTGAGCTAAGGGCTGCAATAAATTCTCATGCTGGAGATATTGAACTCCGTACCATTGTCGACAATTTCATGACGCAATTTGATGATATCTTCAGGCTCAAGGGTATTGCTGCAAAAGCAGATGTTTTCCACATTCTTTCAGGAATGTGGAAGACTCCAGCTGAGAGGTGTTTCATGTGGATTGGAGGCTTTCGATCGTCTGAGCTTCTTAAACTTCTTGTAAATCAACTGGAGCCTTTAACGGAGCAACAGTTGATGGGCATCTACAACTTGCAGCAGTCATCTCAGCAGGCCGAAGATGCGTTGTCTCAGGGAATGGATGCATTGCAGCAATCACTTGCCGAGACATTGGCGAATGGTGCACCTAACCCTTCGGGCTCTTCAGGAAATGTAGCAAATTACATGGGCCAAATGGCTATGGCCATGGGAAAGCTCGGTACTCTTGAAGGCTTTCTTCGACAGGCTGATAATCTGCGGCAGCAAACATTACAACAGATGCTTCGAATTTTAACAACTAGGCAATCAGCTAGAGCTCTCCTTGCAATTAGTGATTATTTCTCGCGGCTGCGAGCTCTAAGTTCTTTGTGGCTTGCCCGACCAAGGGAATGA 1404 0.4523 MGSRARTVNVSSTGDSNNVVNGMPSYAPPPPMPSSSSSMGIDATNVLPSRISEFGNLEQTLGFRVEDAINLSRNPLFNQLQMKSNSQALGADVQFGALSKSIANSDINLSAAITGSQTLPLQKDLQPNLASTSAGHRENWGESNMADASPRTDTSTDDTEDKNQMPERGESSERSKDKADQKTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQAHSMSGNGAMAFDVEYARWLEEHNRQTSELRAAINSHAGDIELRTIVDNFMTQFDDIFRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSELLKLLVNQLEPLTEQQLMGIYNLQQSSQQAEDALSQGMDALQQSLAETLANGAPNPSGSSGNVANYMGQMAMAMGKLGTLEGFLRQADNLRQQTLQQMLRILTTRQSARALLAISDYFSRLRALSSLWLARPRE 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151236g00005 467 Coils Coil 201 228 - -
Stsc151236g00005 467 PANTHER TRANSCRIPTION FACTOR TGA9 136 467 - -
Stsc151236g00005 467 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 180 224 IPR004827 GO:0003700|GO:0006355
Stsc151236g00005 467 MobiDBLite consensus disorder prediction 130 183 - -
Stsc151236g00005 467 Pfam Seed dormancy control 265 339 IPR025422 GO:0006351|GO:0043565
Stsc151236g00005 467 ProSiteProfiles DOG1 domain profile. 247 464 IPR025422 GO:0006351|GO:0043565
Stsc151236g00005 467 SMART brlzneu 178 241 IPR004827 GO:0003700|GO:0006355
Stsc151236g00005 467 MobiDBLite consensus disorder prediction 130 152 - -
Stsc151236g00005 467 CDD bZIP_HBP1b-like 182 234 - -
Stsc151236g00005 467 Pfam bZIP transcription factor 181 222 IPR004827 GO:0003700|GO:0006355
Stsc151236g00005 467 MobiDBLite consensus disorder prediction 1 38 - -
Stsc151236g00005 467 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 185 200 IPR004827 GO:0003700|GO:0006355
Stsc151236g00005 467 SUPERFAMILY Leucine zipper domain 182 225 IPR046347 GO:0003700|GO:0006355
Stsc151236g00005 467 FunFam BZIP family transcription factor 181 230 - -
Stsc151236g00005 467 Gene3D - 181 232 - -
Stsc151236g00005 467 MobiDBLite consensus disorder prediction 153 183 - -
Stsc151236g00005 467 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151236g00005 Stsc-Chr151236 53753 59458 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151236g00005 145 467 bZIP Transcription Factor Family AT3G12250 75.831 3.60e-176 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Stsc151236g00005 DOG1 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151236g00005 K14431 - gmx:100780071 765.377