Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151236g00003 ATGGTGAAAGGATCTCGGTCTCAGCTTTCGTTGAATAATTACGATGGTAATGAAGATGAAGACATTGAAACTGTCAACTACGAAAGTGGTAGTGATAATGAAGATAATCCAGATCAGCCTGAGTCTTTCACTTCTAGGCAATGGCCTCAAACTTTCAGAGAAGCAACTGATTCTTACTCCATTGCTGCAGCTCCGAATCTTGGATCATTTCTTCGAGGACCAAGTGTTATCTATGCAAGCTTTGTCAATAAGTCCAAGAGTTACTTAGAACTAGATGGAAAGGCTTCTTTTCTATCTGGTATTGGACATGGTGGTAGTGTACTTCAAGACGGGGTCACAAGACAACAATCAACATGGTGGGAGAAAGCTTCAGTTCAAATGCAAATTCCTGAAGAAATTCCCCTTGGATATGGATGCAACCTCACTCAAACTATATTCAATGGTATCAATGTTATGGCTGGAGTTAGCCTTCTGTCTTCACCTTTAACGGTGAAGCAAGCAGGGTGGGCGAGCTTGCTGGTGATGCTTTTTTTTGCGGTTATGTGTTTTTATACAGCGGACCTTATGAGACACTGCTTTGAAAGCAGAGAAGGGATTGTCAGCTACCCAGATATAGGAGAAGCTGCATTCGGGAGATATGGCCGTCTTGTTGTTTCGATCATTTTGTACATTGAATTATTTTCATATTGTGTGGAATTTATCATCATGGAAGGGGATAACCTTACCGGGCTGTTTCCCGGAACATCTTTGGATATGGGAAGCCTCCACTTGGACTCCAAACATTTGTTTGGAATTTTGACTGCGCTTATCATTCTCCCTACTGTTTGGTTAAAGGATCTTCGCATAATCTCTTATCTCTCAGCTGGAGGTGTGATTACTACAATTGTGATTATTATCTGTGTGCTTACGGTTGGGGCAACTGAAGTTGGATTCCATCCCGGTGGCTCTTTCCTCCATTGGGGTGGCATTCCATTTGCATTCGGTATCTATGGGTTTGGCTTCGCAGGGCACTCTGTTTTTCCCAATATTTACCAGTCTATGGCCAACAAACGAGAATTTAACAAGGCAATCCTTATAGTTTTTATCTTATGCGTCTTTCTATATGGACTCGTTGCAATCCCGGGATATCTCATGTTTGGTGACGAGGTTTTGTCTCAGATAACATTGAACCTGCCTCCTAATGCATTTGCTTCCAAGATTGCCCTGTGGATAATATCTAATTTTTCCTTAATTATAAACAAATATGCTTTGACCATGAACCCACTTGCAAGGAGTCTGGAGGAGTTGCTGCCCCACAGAATTTCAAGTACCACTTGGTGTTTCATGCTTCTCAGAACAGTATTGGTTATGGCTACTCTTTTAGCCGCTTTTCTAATTCCTTTTTTTGGGCTTGTGATGGCTTTAATTGGTTCTCTGCTCAGTGTACTTGTGGCCTTGATATTGCCAGCCTTATGTTTTCTGAGAATTGTGGGAAAAAAGGCAACAAGTACACAGGTTACGTTAAGCATTATAATAGCTGCAGTGGGAATCGCCAGTGCTTTCCTTGGAACATATTCAGCTTTGTTGAAAATTATTGAGAGTTACTGA 1587 0.4152 MVKGSRSQLSLNNYDGNEDEDIETVNYESGSDNEDNPDQPESFTSRQWPQTFREATDSYSIAAAPNLGSFLRGPSVIYASFVNKSKSYLELDGKASFLSGIGHGGSVLQDGVTRQQSTWWEKASVQMQIPEEIPLGYGCNLTQTIFNGINVMAGVSLLSSPLTVKQAGWASLLVMLFFAVMCFYTADLMRHCFESREGIVSYPDIGEAAFGRYGRLVVSIILYIELFSYCVEFIIMEGDNLTGLFPGTSLDMGSLHLDSKHLFGILTALIILPTVWLKDLRIISYLSAGGVITTIVIIICVLTVGATEVGFHPGGSFLHWGGIPFAFGIYGFGFAGHSVFPNIYQSMANKREFNKAILIVFILCVFLYGLVAIPGYLMFGDEVLSQITLNLPPNAFASKIALWIISNFSLIINKYALTMNPLARSLEELLPHRISSTTWCFMLLRTVLVMATLLAAFLIPFFGLVMALIGSLLSVLVALILPALCFLRIVGKKATSTQVTLSIIIAAVGIASAFLGTYSALLKIIESY 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151236g00003 528 MobiDBLite consensus disorder prediction 1 15 - -
Stsc151236g00003 528 Gene3D Amino acid/polyamine transporter I 139 525 - -
Stsc151236g00003 528 PANTHER OS05G0424000 PROTEIN-RELATED 144 509 - -
Stsc151236g00003 528 FunFam Amino acid transporter AVT1A 137 527 - -
Stsc151236g00003 528 MobiDBLite consensus disorder prediction 1 46 - -
Stsc151236g00003 528 MobiDBLite consensus disorder prediction 29 46 - -
Stsc151236g00003 528 Pfam Transmembrane amino acid transporter protein 141 520 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151236g00003 Stsc-Chr151236 31281 35054 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151236g00003 28 463 Amino Acid or Auxin Permease AAAP Family AT2G41190 59.071 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151236g00003 K15015 - gmx:100816431 664.84