Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151235g00011 ATGGATGGAGGTGCAGCAGAGATAATGTTTCTTCGGAATTATAAGTTAGGAAAAGTGATTGGGCATGGATCTTTTGGTAAAGTCAGAATTGCTCAACATTTATCAACTGGTCATCAAGTTGCTGTTAAGATCCTTAACTGTAACAAGATCAAGGAAATGAAAATGGAAGACAAAGTGAGAAGAGAAATCAAAGTTCTAAGAATGTTCATGCATCCTCACATCGTAAGGCTTTATGAGGTTGTGGAAACTTCAACAGACATTTATGTTGTTATGGAATATGCTGAATCTGGAGACCTCTTTGATTACATAATAATTCAAAAGGACAGGTTGCCAGAGGATGAAGCTCGCAAATTTTTTCAGCAGATAATCTGTGGTGTGGAGTACTGTCACAGGAATATGGTGGTTCATAGAGATCTGAAGCCAGAGAATTTACTACTGAATTCAAGAGGTAATGTCAAAATTGCAGATTTTGGGTTTTGCAACATCATGAGAGATGGTCATCCTCTTACTACAAGTTGTGGAAGCCCCCTTTATGCAGCTCCTGAGGTTGTGTCAGGGAAACCATATGCTGGACCAGAAGTTGATGTTTGGAGCTGTGGAGTCATTCTATATGCTCTTCTTTGTGCTCACCTTCCTTTTGAAGATGACAACGTTCCAAATCTCTTCAAGAAAATTAAGGGTGGGATATACAGTGTTCCTGGCCATGTGTCAGGTGGTGCTAGAGATTTGATAAAAGGAATGCTTGTGGTTGATCCAATGAAAAGGTTCACTATACCTGCCATCCTTCAACACCCATGGTTTACACTTCATCTTCCTCCATATTTATTACCTCTTCCACCACCACATACAATCCAACAACACAAAAAGATTATTGATGAGGAAGTCCTTCAAGAATTGGTGAATAAAGGGTTCAACAAGAATCATTTGGTTGAATCATTTCACAACAAGATACAAAATGAGGGTACTGTAGCATACTCTTTGTTATTGGACAAGAAGCTATGTGATTCCAACAATGGCTACCTTGGACCAGTGTTTCAACAATCAATTGATTCGAATTTTAACCACATCATTTCAAGGGAAATTGCTATGAACAATCCAAGAGTATCATTGAGATCGCAGTTTTCTGCTGAGAGAAAATGGGCCCTTGGACTTCAGTGCGGTGCCCATCCTCGCAAGATAATAACGGAAGTCCTTAAAGCTCTACGAGAATTAAGTGTTTGTTGGAAGAAAATTGGGCATTACAACATCAAGTGTATGTGGGTTAATAATAATAATCATGATGCATCCAACAATAATGTTCACAATGATATTGCTTCCTCTGTTTCAAATGTGATCAAATTTGAAGTGCAGCTTTACAAAACTGCAGAAGGAAAATATCTGGTTGATCTTCAAAGGGTTCAAGGTCCACAGCTTCTTTTCTTGGATCTTTGTGTTGCCTTCCTTGTCAAGCTTCGTGTCCTCTAA 1464 0.3887 MDGGAAEIMFLRNYKLGKVIGHGSFGKVRIAQHLSTGHQVAVKILNCNKIKEMKMEDKVRREIKVLRMFMHPHIVRLYEVVETSTDIYVVMEYAESGDLFDYIIIQKDRLPEDEARKFFQQIICGVEYCHRNMVVHRDLKPENLLLNSRGNVKIADFGFCNIMRDGHPLTTSCGSPLYAAPEVVSGKPYAGPEVDVWSCGVILYALLCAHLPFEDDNVPNLFKKIKGGIYSVPGHVSGGARDLIKGMLVVDPMKRFTIPAILQHPWFTLHLPPYLLPLPPPHTIQQHKKIIDEEVLQELVNKGFNKNHLVESFHNKIQNEGTVAYSLLLDKKLCDSNNGYLGPVFQQSIDSNFNHIISREIAMNNPRVSLRSQFSAERKWALGLQCGAHPRKIITEVLKALRELSVCWKKIGHYNIKCMWVNNNNHDASNNNVHNDIASSVSNVIKFEVQLYKTAEGKYLVDLQRVQGPQLLFLDLCVAFLVKLRVL 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151235g00011 487 SUPERFAMILY KA1-like 346 486 IPR028375 -
Stsc151235g00011 487 SUPERFAMILY Protein kinase-like (PK-like) 11 288 IPR011009 -
Stsc151235g00011 487 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 290 330 IPR015940 -
Stsc151235g00011 487 SMART serkin_6 14 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151235g00011 487 FunFam Non-specific serine/threonine protein kinase 383 485 - -
Stsc151235g00011 487 CDD STKc_AMPK_alpha 11 267 - -
Stsc151235g00011 487 Gene3D Transferase(Phosphotransferase) domain 1 6 348 - -
Stsc151235g00011 487 ProSiteProfiles Protein kinase domain profile. 14 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151235g00011 487 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 12 327 - -
Stsc151235g00011 487 Gene3D Kinase associated domain 1, KA1 383 485 - -
Stsc151235g00011 487 FunFam Serine/threonine-protein kinase ppk25 10 269 - -
Stsc151235g00011 487 CDD AMPKA_C 377 484 - -
Stsc151235g00011 487 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 438 486 IPR001772 -
Stsc151235g00011 487 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Stsc151235g00011 487 CDD UBA_SnRK1_plant 291 331 - -
Stsc151235g00011 487 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Stsc151235g00011 487 Pfam Kinase associated domain 1 444 486 IPR001772 -
Stsc151235g00011 487 Pfam Protein kinase domain 14 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151235g00011 487 FunFam Non-specific serine/threonine protein kinase 4 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151235g00011 Stsc-Chr151235 51232 54301 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151235g00011 14 276 CBL-interacting serine-threonine protein kinases AT4G24400 47.348 4.00e-83 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Stsc151235g00011 Pkinase 2.9e-79 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151235g00011 K07198 - gmx:100796687 673.7