Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151235g00010 ATGGATGGAGGCCGTGGTGCTAGTGGTGTGGATATGTTTCTTCCAAATTATAAACTTGGAAAAACACTTGGCATTGGATCCTTTGGCAAGGTGAAAATTGCGGAACATGTATTGACCGGTCATAAAGTTGCTATTAAGATTCTTAACCGTAGGAAGATAAAGAACATGGAAATGGAAGAAAAAGTGAGAAGAGAAATCAAAATTTTAAGACTGTTCATGCATCCTCACATTATTCGGCTTTATGAGGTTGTAGAAACTCCAACTGACATTTACGTTGTAATGGAATATGTGAAATCTGGAGAGCTCTTTGACTACATAGTAGAAAAGGGCAGGTTGCCAGAGGATGAAGCCCGCAATTTTTTTCAGCAGATAATCTCTGGTGTGGAGTACTGTCACAGAAATATGGTGGTCCATAGAGACTTGAAGCCAGAGAATTTACTTTTGGACTCCAGGCGCAATGTCAAGATAGCAGATTTTGGCTTGAGCAACATCATGAGGGATGGTCACTTTCTTAAGACAAGCTGTGGAAGCCCTAACTATGCTGCTCCAGAGGGTGGGATATACACTCTTCCTAGTCATCTGTCACCTGGTGCTAGAGATTTGATACCAAGGATGCTTGTGGTTGATCCTATGAAGAGGATGACCATACCTGAGATCCGTCAACACCCATGGTTCCAAGCTCGTCTTCCTCGTTATTTAGCTGTGCCACCACCAGATACAATGCAACAAGCAAAAAAGATTGATGAGGAGATCCTTCAGGAAGTAGTGAATATGGGATTTGACAGGAATCAGTTGGTTGAATCACTTCGCAACAGGATGCAAAATGAGGGCACTGTAGCATACTATTTGTTGTTGGACAACAGATTCCGTGTTTCCAGTGGCTATCTTGGAGCTGAGTTTCAAGAATCAATGGATTCTGGTTTTAACCAAATGCATCCCAGTGAAGTTGCTTCTCCAGTTCTTGGGCACCGTATTCCCAGCTATATAGATAATCCAGGAGTAGGATTGAGACCACAGTTGCCAGTTGAGAGAAAATGGGCACTTGGGCTTCAGTCTCGGGCCCACCCTCGGGAAATAATGACCGAGGTCCTCAAAGCTCTTCAAGAATTACATGTTTGTTGGAAGAAGATTGGACACTACAACATGAAGTGCAGGTGGGTTGCTGGTATTCCAGGTAATCATGAAGGGATGGTTAACAATCATTACTTTGGAGATGATTCCAGCATTATTGAGAACGATGCTGTTTCTAATAATGTGGTCAAGTTCGAAGTGCAGCTTTACAAAACTCGGGAAGAAAAGTATCTGCTTGATCTTCAAAGGCTCCAAGGTCCACAGTTTCTCTTCTTGGATCTTTGTGCCGCCTTCCTCGCACAGCTTCGTGTTCTCTAG 1389 0.4312 MDGGRGASGVDMFLPNYKLGKTLGIGSFGKVKIAEHVLTGHKVAIKILNRRKIKNMEMEEKVRREIKILRLFMHPHIIRLYEVVETPTDIYVVMEYVKSGELFDYIVEKGRLPEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSRRNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEGGIYTLPSHLSPGARDLIPRMLVVDPMKRMTIPEIRQHPWFQARLPRYLAVPPPDTMQQAKKIDEEILQEVVNMGFDRNQLVESLRNRMQNEGTVAYYLLLDNRFRVSSGYLGAEFQESMDSGFNQMHPSEVASPVLGHRIPSYIDNPGVGLRPQLPVERKWALGLQSRAHPREIMTEVLKALQELHVCWKKIGHYNMKCRWVAGIPGNHEGMVNNHYFGDDSSIIENDAVSNNVVKFEVQLYKTREEKYLLDLQRLQGPQFLFLDLCAAFLAQLRVL 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151235g00010 462 Gene3D Kinase associated domain 1, KA1 349 460 - -
Stsc151235g00010 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Stsc151235g00010 462 Pfam UBA/TS-N domain 247 283 IPR015940 -
Stsc151235g00010 462 PANTHER SERINE/THREONINE KINASE 187 290 - -
Stsc151235g00010 462 SUPERFAMILY KA1-like 282 461 IPR028375 -
Stsc151235g00010 462 SMART serkin_6 17 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151235g00010 462 SMART uba_6 248 285 IPR015940 -
Stsc151235g00010 462 Gene3D Transferase(Phosphotransferase) domain 1 186 233 - -
Stsc151235g00010 462 FunFam Maternal embryonic leucine zipper kinase 8 186 - -
Stsc151235g00010 462 Gene3D Transferase(Phosphotransferase) domain 1 8 185 - -
Stsc151235g00010 462 Pfam Kinase associated domain 1 419 461 IPR001772 -
Stsc151235g00010 462 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 413 461 IPR001772 -
Stsc151235g00010 462 CDD UBA_SnRK1_plant 247 287 - -
Stsc151235g00010 462 FunFam Non-specific serine/threonine protein kinase 8 96 - -
Stsc151235g00010 462 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 246 286 IPR015940 -
Stsc151235g00010 462 SUPERFAMILY UBA-like 235 284 IPR009060 GO:0005515
Stsc151235g00010 462 Gene3D - 242 288 - -
Stsc151235g00010 462 CDD AMPKA_C 343 459 - -
Stsc151235g00010 462 ProSitePatterns Protein kinases ATP-binding region signature. 23 46 IPR017441 GO:0005524
Stsc151235g00010 462 FunFam Non-specific serine/threonine protein kinase 349 460 - -
Stsc151235g00010 462 SUPERFAMILY Protein kinase-like (PK-like) 14 241 IPR011009 -
Stsc151235g00010 462 Pfam Protein kinase domain 17 184 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc151235g00010 462 ProSiteProfiles Protein kinase domain profile. 17 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151235g00010 Stsc-Chr151235 43825 48573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151235g00010 17 225 CBL-interacting serine-threonine protein kinases AT4G24400 43.701 3.78e-66 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Stsc151235g00010 Pkinase 1e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151235g00010 K07198 - gmx:100796687 836.639