Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc151235g00009 ATGGCAAGGAAGAGAAAGGTTGCTGAAGCAGTTGAAGAAAACATTGAATCATGGCATGAAATGATCAAAGAAGCTGAAGCATTAGGAGGGTCTACAAGAAGAACAAGAAAGAGGTTTGTTGGTGTGAGACAAAGGCCATCAGGAAGATGGGTAGCTGAGATCAAAGATACCATTCAGAAGATCAGAGTTTGGTTAGGAACTTTTGATACTGCTGAAGAAGCTGCTAGAGCCTATGATGAAGCAGCTTGCATCCTCAGAGGATCAAACACTCGAACTAACTTTGATCCTTCTTATCCTCATTCTTCTTCAACTCCTGCGCTTCCTCCGAAGATCGCGAAACTCCTCCTTCAGAGGCTTAAAGCAAAGAATAATAGCACCTCTTGCTTTTCTTCTTCTCCTTCATCATCCTTTAGTTCTTCTGATCTTAGTACTACTCATCAAGAAAATCATCAAGCTGATGTGTATGGAGAAGAGTTGAAAGGCTTCTCGATTGATCAATTCGCAGATTTCCTTTATGATCATGAAGCTTGTAGCACAAGCAACAACGAATTTAGTGATAATATTGAACAAATTGATTGCATCACTGGTAGTTTTGAATCGTGTTTAGATGAGAAAGATTCCGGTAAGGGGAAAGACACGGATGCAACACAAATATCGAGCACTGACTCGAATTCAAGAGGGGAAAAGGAGGAAGAAAGTGAGGAAGAAGAAGGATTGATTGTTGAGGATTTCAGATTCCTGGATGACAATGTTGCAAGTTACTATTATTCTCCTTTTGAGATTGTTGAAGAGATGGAGGAGCCTGTTGTGGAGGCAGAGAACTATGGTGGTGATGATGATGAGCCTTCAATGATGAAAGCCATAATGAATAGAATGAAGTATGAGAGGAAGTTCTCAGCTTCTCTCTATGCCTTCAATGGGATATATGAGTGCTTGAAGTTGAAGCTTCATCAGTCAGGGAACATAAAGGGTAGAACAGAAATTTCAGATCAAATTAGCAAACTCAAGAAAGCTTGCAGCAAGAACAAAAATGAGGTTAATAAGGAGGAAATGGAAATGGAAAAGGAAAAGGAAAAGGAAAAGGAAAAGGAGCAGGAATCCATTGATTCTCCCTTATCATCAAACATTGATGGAGATCTGTTGTTTTGGAATTCCCTTGATCTCCCTAACATTTTCTAA 1179 0.3969 MARKRKVAEAVEENIESWHEMIKEAEALGGSTRRTRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACILRGSNTRTNFDPSYPHSSSTPALPPKIAKLLLQRLKAKNNSTSCFSSSPSSSFSSSDLSTTHQENHQADVYGEELKGFSIDQFADFLYDHEACSTSNNEFSDNIEQIDCITGSFESCLDEKDSGKGKDTDATQISSTDSNSRGEKEEESEEEEGLIVEDFRFLDDNVASYYYSPFEIVEEMEEPVVEAENYGGDDDEPSMMKAIMNRMKYERKFSASLYAFNGIYECLKLKLHQSGNIKGRTEISDQISKLKKACSKNKNEVNKEEMEMEKEKEKEKEKEQESIDSPLSSNIDGDLLFWNSLDLPNIF 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc151235g00009 392 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
Stsc151235g00009 392 MobiDBLite consensus disorder prediction 343 379 - -
Stsc151235g00009 392 CDD AP2 37 97 IPR001471 GO:0003700|GO:0006355
Stsc151235g00009 392 Coils Coil 332 368 - -
Stsc151235g00009 392 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Stsc151235g00009 392 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Stsc151235g00009 392 MobiDBLite consensus disorder prediction 204 237 - -
Stsc151235g00009 392 FunFam ethylene-responsive transcription factor RAP2-11 37 96 - -
Stsc151235g00009 392 Coils Coil 8 28 - -
Stsc151235g00009 392 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 29 299 - -
Stsc151235g00009 392 MobiDBLite consensus disorder prediction 343 368 - -
Stsc151235g00009 392 SUPERFAMILY DNA-binding domain 38 97 IPR016177 GO:0003677
Stsc151235g00009 392 Pfam AP2 domain 38 87 IPR001471 GO:0003700|GO:0006355
Stsc151235g00009 392 Gene3D AP2/ERF domain 37 96 IPR036955 GO:0003700|GO:0006355
Stsc151235g00009 392 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Stsc151235g00009 392 MobiDBLite consensus disorder prediction 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc151235g00009 Stsc-Chr151235 41774 42952 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc151235g00009 32 115 AP2-EREBP Transcription Factor Family AT5G19790 69.048 7.46e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Stsc151235g00009 AP2 1.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc151235g00009 K09286 - gmx:100790398 367.466